View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_725 (Length: 205)
Name: NF10481A_low_725
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_725 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 10368474 - 10368546
Alignment:
| Q |
23 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
95 |
Q |
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| T |
10368474 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
10368546 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 10368608 - 10368656
Alignment:
| Q |
157 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcat |
205 |
Q |
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| T |
10368608 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcat |
10368656 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 36116814 - 36116775
Alignment:
| Q |
166 |
atctgaatctttgaactccattcttcttcttctccttcat |
205 |
Q |
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| T |
36116814 |
atctgaatctttgaactccattattcttcttctccttcat |
36116775 |
T |
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