View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_726 (Length: 205)
Name: NF10481A_low_726
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_726 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 37918486 - 37918359
Alignment:
| Q |
23 |
caacacccaatccaccaaactaatcaaacccaatagttccacttccacctccaaaaaccaaaccagaaccctcaaatctagtagtaaccttaattcctcc |
122 |
Q |
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| T |
37918486 |
caacacccaatccaccaaactaatcaaacccaatagttccacttccacctccaaaaaccaaaccaaaaccctcaaatctagtagtaaccttaattcctcc |
37918387 |
T |
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| Q |
123 |
aaaaaccaaaccaaaatcatcaaatcta |
150 |
Q |
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| T |
37918386 |
aaaaaccaaaccaaaaccatcaaatcta |
37918359 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 37918391 - 37918293
Alignment:
| Q |
70 |
cctccaaaaaccaaaccagaaccctcaaatctagtagtaaccttaattcctccaaaaaccaaaccaaaatcatcaaatctagtagtaaccttgattctcc |
169 |
Q |
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| T |
37918391 |
cctccaaaaaccaaaccaaaaccatcaaatctaata---accttaattcctccaaaaaccaaaccaaaatcatcaaatctagtagtaaccttaattctcc |
37918295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 37918346 - 37918274
Alignment:
| Q |
70 |
cctccaaaaaccaaaccagaaccctcaaatctagtagtaaccttaattcctccaaaaaccaaaccaaaatcat |
142 |
Q |
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| T |
37918346 |
cctccaaaaaccaaaccaaaatcatcaaatctagtagtaaccttaattctcccaaaaaccaaaccaaaatcat |
37918274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 37918439 - 37918391
Alignment:
| Q |
118 |
cctccaaaaaccaaaccaaaatcatcaaatctagtagtaaccttgattc |
166 |
Q |
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| T |
37918439 |
cctccaaaaaccaaaccaaaaccctcaaatctagtagtaaccttaattc |
37918391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 9805278 - 9805323
Alignment:
| Q |
157 |
accttgattctcccatttagcgagtacatgaaataccatccatctt |
202 |
Q |
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| T |
9805278 |
accttgattctcccttttcgcgagtacatgaaataccttccatctt |
9805323 |
T |
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