View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_735 (Length: 203)
Name: NF10481A_low_735
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_735 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 13460721 - 13460533
Alignment:
| Q |
7 |
aaaaactcatctccagtcaccgacgaaaaagtcgtctccggtcgcagcacactcctcgtcgcatcaattcaagaagccaaagacaaaatctcccaaatcg |
106 |
Q |
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| T |
13460721 |
aaaaactcatctccagtcaccgacgaaaaagtcgtctccggtctcagcacactcctcgtcgcatcaattcaagaagccaaagacaaaatctcccaaatcg |
13460622 |
T |
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| Q |
107 |
aatacgttttctgctcccaactctaccctaatttccaatccacttccaaaaactccgacgctaaacgccgccgtaacaccaaactcgaa |
195 |
Q |
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| T |
13460621 |
aatacgttttctgctcccaactctaccctaatttccaatccacttccaaaaactccgactcaaaacgtcgccgtatcaccgaactcgaa |
13460533 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 47360484 - 47360419
Alignment:
| Q |
57 |
actcctcgtcgcatcaattcaagaagccaaagacaaaatctcccaaatcgaatacgttttctgctcc |
123 |
Q |
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| T |
47360484 |
actcctcgtccaatcaattcaagaagccaaa-acaaaatctgtcaaatcgaaaacgttttctgctcc |
47360419 |
T |
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