View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_736 (Length: 202)

Name: NF10481A_low_736
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_736
NF10481A_low_736
[»] chr4 (12 HSPs)
chr4 (13-187)||(27514410-27514584)
chr4 (16-187)||(27468777-27468957)
chr4 (13-187)||(27524041-27524223)
chr4 (110-187)||(27508488-27508565)
chr4 (13-187)||(27503442-27503622)
chr4 (16-186)||(27476011-27476187)
chr4 (13-110)||(27489628-27489723)
chr4 (13-74)||(27508425-27508486)
chr4 (13-60)||(27556974-27557021)
chr4 (113-177)||(27517369-27517433)
chr4 (13-75)||(27506263-27506325)
chr4 (15-48)||(27497875-27497908)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 27514410 - 27514584
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcaca 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||| || |||||||||| || |||    
T  27514410 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-aca 27514508  T
Q  113 tctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 187  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27514509 tctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27514584  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 27468957 - 27468777
Alignment:
Q  16 acatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac---- 111  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||| || |||||||||| |||||        
T  27468957 acatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttga 27468858  T
Q  112 ----atctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 187  Q
        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27468857 gcacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27468777  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 27524041 - 27524223
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac- 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   | ||||||||| | |||||||||||||| || |||||||| |||||||     
T  27524041 tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcact 27524140  T
Q  112 -------atctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 187  Q
           ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  27524141 tgagcacatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacacca 27524223  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 27508488 - 27508565
Alignment:
Q  110 acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 187  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27508488 acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca 27508565  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 27503442 - 27503622
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------t 106  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||  || |||||  |   | | ||||||||||| |||||||||||||      |    
T  27503442 tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatact 27503538  T
Q  107 tg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacca 187  Q
    ||  ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||    
T  27503539 tgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacacca 27503622  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 27476187 - 27476011
Alignment:
Q  16 acatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg- 108  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||  || |||||  |   | | ||||||||||| |||||||||||||      |||     
T  27476187 acatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttga 27476091  T
Q  109 -cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacc 186  Q
     ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  27476090 tcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacacc 27476011  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 27489628 - 27489723
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgca 110  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||  || ||||  ||||  |||||||||  ||| || |||||||||||||||    
T  27489628 tggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgaggttgca 27489723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 27508425 - 27508486
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaag 74  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||  || |||||||||    
T  27508425 tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag 27508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 27557021 - 27556974
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgttt 60  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  27557021 tggaaatcaacactatcataatgaagaaaacatgtctaaagcatgttt 27556974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
Q  113 tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctta 177  Q
    ||||| |||||  |||||||||||||||| |||| |||||||| ||||||| ||||||| |||||    
T  27517369 tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta 27517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27506263 - 27506325
Alignment:
Q  13 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagt 75  Q
    |||||||||||| | | |||||||||||||||||||| || |||||||  || ||||||||||    
T  27506263 tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 27506325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 27497908 - 27497875
Alignment:
Q  15 gacatcagcattatcataatgaagaaaacatgtc 48  Q
    ||||||| ||||||||||||||||||||||||||    
T  27497908 gacatcaacattatcataatgaagaaaacatgtc 27497875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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