View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_74 (Length: 394)
Name: NF10481A_low_74
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 179 - 389
Target Start/End: Complemental strand, 20527355 - 20527145
Alignment:
| Q |
179 |
tattcaccaaaaccgagccaccattttaactcaggcctatttaccatcagattgtgcattgttgctttgcaatcatcctttgcttgagtaaatttctgtc |
278 |
Q |
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| T |
20527355 |
tattcaccaaaaacgagcaaacattttaactcaggcctatttaccatcagattgtacattgttgctttccaatcatcctttgcttcagtaaatttctgac |
20527256 |
T |
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| Q |
279 |
aattgcatcatgaatcacaagacaaaacaaagccggaaaatgtcaatgagtgcttataaaaatgcaaagagggtgtatttaatactaacccgaggtgagt |
378 |
Q |
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| T |
20527255 |
aattgcatcatgaatcacaagccaaaacaaagagggaaaaatttaatgagtgcttataaaaatgcaaagagggagtatttgataataatcaaaggtgagt |
20527156 |
T |
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| Q |
379 |
gccactttttt |
389 |
Q |
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| T |
20527155 |
gacactttttt |
20527145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 20527628 - 20527459
Alignment:
| Q |
11 |
tgatatgaaacacaaatccaaaattattcctagagagcattgcgtcattgaggtgaaaactctattctaagcacaagatacacatggaataaaccnnnnn |
110 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20527628 |
tgatatgaaacacaaatccaaaatcattcctagacagcaaggcgtcactaaggtgaaaactctattctaagcacaagatactcatggaataaaccaaaaa |
20527529 |
T |
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| Q |
111 |
nngttcaactttaatacaacctcaaggcaaaaaattcatcgaaacatatcaagaccactcatcaacaatat |
181 |
Q |
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| T |
20527528 |
gagttcaaccttaatacactctcaaggcaaaaaaatgatcgaaacatatcaag-ccgctcctcaacaatat |
20527459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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