View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_741 (Length: 201)
Name: NF10481A_low_741
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_741 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 39080909 - 39080749
Alignment:
| Q |
19 |
caaagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtgataca |
118 |
Q |
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| T |
39080909 |
caaagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgataatgatcagtgataca |
39080810 |
T |
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| Q |
119 |
actatatacaaggatataatatatatttagagcctattaggaacctaatacataaagacct |
179 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
39080809 |
actatatacaaggatataatatatatttagagcttattaggaacataatacataaagacct |
39080749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 39090272 - 39090169
Alignment:
| Q |
19 |
caaagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtgataca |
118 |
Q |
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|||||||| ||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
39090272 |
caaagagaggtgaaatggtaggaaatcatttaaagagattgagagttgagggtggaactcaagaaaaagtatattgaaattgatgatga--agtgataca |
39090175 |
T |
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| Q |
119 |
actata |
124 |
Q |
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|||||| |
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| T |
39090174 |
actata |
39090169 |
T |
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