View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_75 (Length: 392)
Name: NF10481A_low_75
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 1165988 - 1166365
Alignment:
| Q |
9 |
gagaagaaccaaggcaagaaggcgcatgtcaggaaacatcagatttattggagaactatataagaagaaaatgttgacagagaggataatgcatgagtgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1165988 |
gagaagaaccaaggcaagaaggcgcatgtcaggaaacatcagatttattggagaactatataagaagaaaatgttgacagagaggataattcatgagtgt |
1166087 |
T |
|
| Q |
109 |
ataaagaagttaccaggtctgtgtcaggatcgtgatgaggaagatgttgaggctctgtgcaagctgatgagttctatcggggagatgattgaccactcca |
208 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1166088 |
ataaagaagttaccaggtctgtgtcaggatcctgatgagaaagatgttgaggctctgtgcaagctgatgagttctatcggggagatgattgaccacccca |
1166187 |
T |
|
| Q |
209 |
aagctaaggaacatatggatgtatatttcgaaaatttgaaaatattatcaaacaacatggatttatcttctagggtgaggtttatgttgaaagatgtaat |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1166188 |
aagctaaggaacatatggatgtatatttcgaaagtttgaaaatattatcaaacaacatggatttatcttctagggtgaggtttatgttgaaagatgtaat |
1166287 |
T |
|
| Q |
309 |
tggtttgagaaggaatagatggcaagtaatgaggaaagttgatgaaaaggtgacgaaggggtttatcacggcgatgaa |
386 |
Q |
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| T |
1166288 |
tgatttgagagggaatagatggcaagtaatgaggaaagttgatgaaaaggtgacgaaggggtttatcacggcgatgaa |
1166365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 1814720 - 1814377
Alignment:
| Q |
9 |
gagaagaaccaaggcaagaaggcgcatgtcaggaaacatcagatttattggagaactatataagaagaaaatgttgacagagaggataatgcatgagtgt |
108 |
Q |
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| T |
1814720 |
gagaagaaccaaggcaagaaggcgcatgttaggaaacatcagattgattggagaactttataagaagaaaatgttgacagagaggataatgcacgagtgc |
1814621 |
T |
|
| Q |
109 |
ataaagaagttaccaggtctgtgtcaggatcgtgatgaggaagatgttgaggctctgtgcaagctgatgagttctatcggggagatgattgaccactcca |
208 |
Q |
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||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
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| T |
1814620 |
ataaagaagttactaggtcagtgtcaggatcctgatgaggaagatgttgaggctctgtgcaagctgatgagtactattggggagatgattgaccatccca |
1814521 |
T |
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| Q |
209 |
aagctaaggaacatatggatgtatatttcgaaaatttgaaaatattatcaaacaacatggatttatcttctagggtgaggtttatgttgaaagatgtaat |
308 |
Q |
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||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||| |
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| T |
1814520 |
aagctaaagaacatatggatgtatattttgaaaggttgaaaatattatcaaacaacatgaatttatcttctagggtaagatttatgttgaaggatgtaat |
1814421 |
T |
|
| Q |
309 |
tggtttgagaaggaatagatggcaagtaatgaggaaagttgatg |
352 |
Q |
| |
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|| |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
1814420 |
tgatttgagaaggaatagatggcaagtaaggagaaaagttgatg |
1814377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 141 - 352
Target Start/End: Original strand, 1164223 - 1164434
Alignment:
| Q |
141 |
tgatgaggaagatgttgaggctctgtgcaagctgatgagttctatcggggagatgattgaccactccaaagctaaggaacatatggatgtatatttcgaa |
240 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |
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| T |
1164223 |
tgatgacgaagatgttgaggctctgtgcaagctgatgagtattattggggagatgattgaccatcccaaaactaaggaacatatgggtgtatatttcgaa |
1164322 |
T |
|
| Q |
241 |
aatttgaaaatattatcaaacaacatggatttatcttctagggtgaggtttatgttgaaagatgtaattggtttgagaaggaatagatggcaagtaatga |
340 |
Q |
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|| |||||||||||||||||||||||| || ||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||| || |
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| T |
1164323 |
aagttgaaaatattatcaaacaacatgaatctatcttctatggtgaggtttatgttgaaggacgtaattgatttgagaaggaatagatggcaagtaagga |
1164422 |
T |
|
| Q |
341 |
ggaaagttgatg |
352 |
Q |
| |
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|||||||||||| |
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| T |
1164423 |
ggaaagttgatg |
1164434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 1164067 - 1164217
Alignment:
| Q |
9 |
gagaagaaccaaggcaagaaggcgcatgtcaggaaacatcagatttattggagaactatataagaagaaaatgttgacagagaggataatgcatgagtgt |
108 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164067 |
gagaagaaccaaggaaagaatgcgcatgttaggaaacatcagattgattggagaactatataagaagaaaatgttgacagagaggataatgcatgagtgt |
1164166 |
T |
|
| Q |
109 |
ataaagaagttaccaggtctgtgtcaggatcgtgatgaggaagatgttgag |
159 |
Q |
| |
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|||||||||||| ||||| | ||||| ||| ||||||||||||||||||| |
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| T |
1164167 |
ataaagaagttaataggtcagggtcagtatcctgatgaggaagatgttgag |
1164217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 17253807 - 17254125
Alignment:
| Q |
14 |
gaaccaaggcaagaaggcgcatgtcaggaaacatcagatttattggagaactatataagaagaaaatgttgacagagaggataatgcatgagtgtataaa |
113 |
Q |
| |
|
|||||||||| ||||| || |||| || || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || || |
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| T |
17253807 |
gaaccaaggctagaagacgaatgttgggtaatatcagattaattggagaactatataagaagaaaatgctgacagagaggataatgcacgagtgcatcaa |
17253906 |
T |
|
| Q |
114 |
gaagttaccaggtctgtgtcaggatcgtgatgaggaagatgttgaggctctgtgcaagctgatgagttctatcggggagatgattgaccactccaaagct |
213 |
Q |
| |
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||||||| |||| ||||||| ||| |||||| |||||| |||| ||||||||||| ||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
17253907 |
aaagttactgggtcagtgtcagaatcctgatgaagaagatattgaagctctgtgcaaactgatgagtactattggggagatgattgaccaccccaaagcc |
17254006 |
T |
|
| Q |
214 |
aaggaacatatggatgtatatttcgaaaatttgaaaatattatcaaacaacatggatttatcttctagggtgaggtttatgttgaaagatgtaattggtt |
313 |
Q |
| |
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||||||||||||||||||||||| |||| | ||| ||||||||||||||||| | |||||||||||| ||||||| |||||||||||| |||| || |
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| T |
17254007 |
aaggaacatatggatgtatattttgaaaggattaaattattatcaaacaacatgaacttatcttctaggttgaggttcatgttgaaagataccattgatt |
17254106 |
T |
|
| Q |
314 |
tgagaaggaatagatggca |
332 |
Q |
| |
|
|||||| |||| ||||||| |
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|
| T |
17254107 |
tgagaaagaatcgatggca |
17254125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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