View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_76 (Length: 391)
Name: NF10481A_low_76
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 47720704 - 47720849
Alignment:
| Q |
98 |
atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg |
197 |
Q |
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| T |
47720704 |
atgaagctcgacaaggtggacgttacttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg |
47720803 |
T |
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| Q |
198 |
ttgcttaaacaattgtcatcaacattaacccatttgggttgatctg |
243 |
Q |
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| T |
47720804 |
ttgcttaaacaattgtcatcaacattaatccatttgggttgatctg |
47720849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 47727696 - 47727841
Alignment:
| Q |
98 |
atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg |
197 |
Q |
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| T |
47727696 |
atgaagctcgacaaggtggacgttacttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg |
47727795 |
T |
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| Q |
198 |
ttgcttaaacaattgtcatcaacattaacccatttgggttgatctg |
243 |
Q |
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| T |
47727796 |
ttgcttaaacaattgtcatcaacattaatccatttgggttgatctg |
47727841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 47753589 - 47753729
Alignment:
| Q |
98 |
atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagactcaagtaagcttccaattatagttttaataggg |
197 |
Q |
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| T |
47753589 |
atgaagctcgacaaggtgaacata-ctggcacttgtaatgtaacctgataaatttgagatccaagactaaagtaagcctccaaatatagctgtaataggg |
47753687 |
T |
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| Q |
198 |
ttgcttaaacaattgtcatcaacattaacccatttgggttga |
239 |
Q |
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| T |
47753688 |
ttgcttaaacaattgtcatcgatattaacccatttaggttga |
47753729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 47709491 - 47709557
Alignment:
| Q |
98 |
atgaagctcgacaaggtggacgttgcttgcacttacaatgtaacctgataaatttgagatccaagac |
164 |
Q |
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||||||||| |||||| |||| || |||||| | |||||||| |||||||||||||||||||||| |
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| T |
47709491 |
atgaagctcaacaaggaggactttaattgcacctgcaatgtaagttgataaatttgagatccaagac |
47709557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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