View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_79 (Length: 389)

Name: NF10481A_low_79

Description: NF10481A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10481A_low_79

[»] scaffold0002 (3 HSPs)

[»] scaffold0263 (1 HSPs)

Target: scaffold0002 (Bit Score: 355; Significance: 0; HSPs: 3)

Name: scaffold0002

Description:

Target: scaffold0002; HSP #1

Raw Score: 355; E-Value: 0

Query Start/End: Original strand, 14 - 388

Target Start/End: Original strand, 401552 - 401926

Alignment:

Q	14	catcaacattgtctggactgaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	401552	catcaacattgtctggaccaaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat	401651	T

Q	114	gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgact	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	401652	gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttcacgccaatgtattctctaaaaatgact	401751	T

Q	214	ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctatatg	313	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	401752	ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctttatg	401851	T

Q	314	ttggggtttagatagattggaatgagtaactctaatttatgcatgcccttttataaggctacttctccttcttaa	388	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	401852	ttggggtttagatagattggaatgagtaactctaatttatgcattcccttttataaggctacttctccttcttaa	401926	T

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Target: scaffold0002; HSP #2

Raw Score: 92; E-Value: 1e-44

Query Start/End: Original strand, 237 - 351

Target Start/End: Original strand, 405323 - 405438

Alignment:

Q	237	gataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgtttt-ttgtgttttctatatgttggggtttagatagattggaa	335	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	405323	gataggagctgttgacatttcggaggatcgatatatgagaaattaatatataatttctttttttgtgttttccatatgttggggtttagatagattggaa	405422	T

Q	336	tgagtaactctaattt	351	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	405423	tgagtaactctaattt	405438	T

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Target: scaffold0002; HSP #3

Raw Score: 43; E-Value: 0.000000000000002

Query Start/End: Original strand, 153 - 239

Target Start/End: Original strand, 93525 - 93611

Alignment:

Q	153	tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	93525	tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat	93611	T

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Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)

Name: scaffold0263

Description:

Target: scaffold0263; HSP #1

Raw Score: 43; E-Value: 0.000000000000002

Query Start/End: Original strand, 153 - 239

Target Start/End: Original strand, 15355 - 15441

Alignment:

Q	153	tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15355	tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat	15441	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]