View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_80 (Length: 389)

Name: NF10481A_low_80
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_80
NF10481A_low_80
[»] chr4 (4 HSPs)
chr4 (3-387)||(43576593-43576977)
chr4 (275-359)||(5240445-5240529)
chr4 (275-359)||(10653842-10653926)
chr4 (275-359)||(10867987-10868071)
[»] chr7 (6 HSPs)
chr7 (3-387)||(42126075-42126459)
chr7 (108-161)||(26084100-26084153)
chr7 (108-161)||(26107887-26107940)
chr7 (277-347)||(38846392-38846462)
chr7 (295-369)||(37012169-37012243)
chr7 (295-327)||(19606873-19606905)
[»] chr8 (5 HSPs)
chr8 (130-387)||(15295948-15296205)
chr8 (130-387)||(15476317-15476574)
chr8 (108-158)||(29155130-29155180)
chr8 (3-83)||(15296227-15296307)
chr8 (3-83)||(15476596-15476676)
[»] chr1 (4 HSPs)
chr1 (93-308)||(46654114-46654329)
chr1 (275-359)||(2360662-2360746)
chr1 (277-344)||(47706471-47706538)
chr1 (108-158)||(10733100-10733150)
[»] chr6 (5 HSPs)
chr6 (108-161)||(4501499-4501552)
chr6 (108-161)||(15825051-15825104)
chr6 (108-161)||(34311045-34311098)
chr6 (275-359)||(14815903-14815987)
chr6 (283-327)||(14617253-14617297)
[»] chr5 (2 HSPs)
chr5 (108-161)||(549689-549742)
chr5 (108-160)||(30280101-30280153)
[»] scaffold1049 (1 HSPs)
scaffold1049 (108-160)||(1216-1268)
[»] chr2 (1 HSPs)
chr2 (100-187)||(35552771-35552858)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 3 - 387
Target Start/End: Complemental strand, 43576977 - 43576593
Alignment:
Q  3 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttgcaaacttgattaggagcagagagagtaataccaggagga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  43576977 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggagga 43576878  T
Q  103 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576877 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 43576778  T
Q  203 gaactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 302  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576777 gaactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 43576678  T
Q  303 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagtt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576677 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagtt 43576593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 5240529 - 5240445
Alignment:
Q  275 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 359  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | |||||| ||| | |||| |||||||| |||| |||||    
T  5240529 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaatttgactttgtaaatccatctacatccaat 5240445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 10653926 - 10653842
Alignment:
Q  275 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 359  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| ||||||||  || | |||| |||||||| |||| |||||    
T  10653926 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaacttgactttgtaaatccatctacatccaat 10653842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 10868071 - 10867987
Alignment:
Q  275 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 359  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | ||||||  || | |||| |||||||| |||| |||||    
T  10868071 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaaattgactttgtaaatccatctacatccaat 10867987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 387
Target Start/End: Complemental strand, 42126459 - 42126075
Alignment:
Q  3 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttgcaaacttgattaggagcagagagagtaataccaggagga 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||    
T  42126459 gagtttggtgttccattgtctacttgcctgttttaatccataaagggatctttgcagtttacaaacttgattaggagcaaagagagtaaaaccaggagga 42126360  T
Q  103 ggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaa 202  Q
    || ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  42126359 ggctgcatgtatacttctccattgagatcaccatgaaaaaaggcagtattgacatcaagctggtaaataggccaatttttagaagcagcaatagacagaa 42126260  T
Q  203 gaactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttata 302  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42126259 gaactctaatagttgtcatctttaccacaggactgaatgtgtccttatagtcaataccttatgtttgtgtgaaacctttggcaacaagtctggccttata 42126160  T
Q  303 tctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagtt 387  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42126159 tctctcaatggtgccattagcatgaagcttaagtttgaaaatccatttacaatcaatggctttcttatgagcaggcagtgaagtt 42126075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 26084100 - 26084153
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26084100 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26084153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 26107887 - 26107940
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26107887 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26107940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 38846392 - 38846462
Alignment:
Q  277 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatcca 347  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| |||||||    
T  38846392 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaatcca 38846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 37012243 - 37012169
Alignment:
Q  295 gccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttctta 369  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||  | | |||||||||||| || | |||||||    
T  37012243 gccttatatctttcaatggtgccattagcatgatatttaattttatagacccatttacaaccgataggtttctta 37012169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 19606873 - 19606905
Alignment:
Q  295 gccttatatctctcaatggtgccattagcatga 327  Q
    ||||||||||| |||||||||||||||||||||    
T  19606873 gccttatatctttcaatggtgccattagcatga 19606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 130 - 387
Target Start/End: Complemental strand, 15296205 - 15295948
Alignment:
Q  130 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgccatctttacca 229  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| |||| |||||||||||    
T  15296205 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15296106  T
Q  230 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 329  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15296105 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15296006  T
Q  330 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagtt 387  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  15296005 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagtt 15295948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 130 - 387
Target Start/End: Complemental strand, 15476574 - 15476317
Alignment:
Q  130 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgccatctttacca 229  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| |||| |||||||||||    
T  15476574 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15476475  T
Q  230 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 329  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15476474 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15476375  T
Q  330 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagtt 387  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  15476374 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagtt 15476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 29155180 - 29155130
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 158  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  29155180 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 29155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15296307 - 15296227
Alignment:
Q  3 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttgcaaacttgattaggagcaga 83  Q
    |||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | || || |||||||| ||||||||    
T  15296307 gagtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15476676 - 15476596
Alignment:
Q  3 gagtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttgcaaacttgattaggagcaga 83  Q
    |||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | || || |||||||| ||||||||    
T  15476676 gagtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 308
Target Start/End: Complemental strand, 46654329 - 46654114
Alignment:
Q  93 accaggaggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagca 192  Q
    ||||||||||| |||||| || ||||||||||| | ||||||| ||||||| ||||||||||||||||| ||  | |  ||||| ||||||||||| |||    
T  46654329 accaggaggagcttgcatatagacttcttcattcaaatcaccacgaagaaaggcagtattgacatcaagttgaaataagggccagttttgagaagctgca 46654230  T
Q  193 atagacagaagaactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtc 292  Q
    ||||  | ||||  ||||| | ||| ||| ||||| ||| || |||| ||||||||||| || || ||||||||||||||||| || ||||| || | ||    
T  46654229 atagctataagagttctaacaattgtcatttttactacatgattgaaagtgtccatgtaatctatgccttctgtttgtgtgaagcccttggcgaccaatc 46654130  T
Q  293 tggccttatatctctc 308  Q
    |||||||||| |||||    
T  46654129 tggccttatacctctc 46654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 2360746 - 2360662
Alignment:
Q  275 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 359  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||| | ||| | |||| |||||||| |||| |||||    
T  2360746 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatggaatttgactttgtaaatccatctacatccaat 2360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 47706471 - 47706538
Alignment:
Q  277 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaat 344  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| ||||    
T  47706471 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaat 47706538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 10733150 - 10733100
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 158  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  10733150 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 10733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 4501552 - 4501499
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  4501552 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 4501499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 15825104 - 15825051
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  15825104 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 15825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 34311098 - 34311045
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  34311098 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 34311045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 14815987 - 14815903
Alignment:
Q  275 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 359  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||||| ||| | |||| |||||||| |||| |||||    
T  14815987 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaatttgactttgtaaatccatctacatccaat 14815903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 14617297 - 14617253
Alignment:
Q  283 gcaacaagtctggccttatatctctcaatggtgccattagcatga 327  Q
    ||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  14617297 gcaaccagtcttgccttatatctttcaatggtgccatttgcatga 14617253  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 549689 - 549742
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 161  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  549689 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 549742  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 30280101 - 30280153
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 160  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  30280101 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 30280153  T

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Target: scaffold1049 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 1216 - 1268
Alignment:
Q  108 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 160  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  1216 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 1268  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 35552858 - 35552771
Alignment:
Q  100 ggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaag 187  Q
    |||||||||||||| ||||||||||  ||||  ||||||||||| ||  | || |||||||  ||  |||||||||||||||||||||    
T  35552858 ggaggttgcatgtaaacttcttcatcaagatgtccatgaagaaaagccttgttaacatcaatttgaaaaagaggccaattttgagaag 35552771  T

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