View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_82 (Length: 386)
Name: NF10481A_low_82
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 133 - 319
Target Start/End: Original strand, 17972778 - 17972964
Alignment:
| Q |
133 |
atgtaataagtaaaatatgatttgatattattattgtgtataacgagggtaccaaaaaattcaagaaagaatgggttttaattgcgtttactattttaaa |
232 |
Q |
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| T |
17972778 |
atgtgataaataaaatatgatttgatattgttattgtgtataacgatgatgctaaaaaattcaagaaagagtgagttttaatcgcgtttactcttttaaa |
17972877 |
T |
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| Q |
233 |
attaaaatctactttgtctaaaacagaaaacagaactatgttcaaaatacaatttgaaagattttaaacagaaaacaatatcttaag |
319 |
Q |
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| T |
17972878 |
attaaaatcatttttgtctaaattagaaaacaatactctgttcataatacaatttgaaagatattaaacataaaacaatatcttaag |
17972964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 16986759 - 16986871
Alignment:
| Q |
228 |
ttaaaattaaaatctactttgtctaaaacagaaaacagaactatgttcaaaatacaatttgaaagattttaaacagaaaacaatatcttaagagttttgt |
327 |
Q |
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| T |
16986759 |
ttaaaattaaaatctattttgtctaatacagaaaacagaactatgttcaaaatacaatttgaaagatattaaacagaaaacaatatcttaagagttttgt |
16986858 |
T |
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| Q |
328 |
taagttatttgtt |
340 |
Q |
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| T |
16986859 |
taagttatatgtt |
16986871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 133 - 333
Target Start/End: Original strand, 17979444 - 17979643
Alignment:
| Q |
133 |
atgtaataagtaaaatatgatttgatattattattgtgtataacgagggtaccaaaaaa-ttcaagaaagaatgggttttaattgcgtttactattttaa |
231 |
Q |
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| T |
17979444 |
atgtgataaataaaatatgatttgatattgttattgtgtataaggatggtgctaaaaaaattcaagaaagagtaagttttaatcgtgtttattcttttaa |
17979543 |
T |
|
| Q |
232 |
aattaaaatctactttgtctaaaacagaaaacagaactatgttcaaaatacaatttgaaagattttaaacagaaaacaatatcttaagagttttgttaag |
331 |
Q |
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| T |
17979544 |
aattaaaattatttttgtctcaaatagaaaacaatactatgttcataatacaatttgaaagatattaaacatcaaacaatatctta--agttttgttaag |
17979641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 16986015 - 16986096
Alignment:
| Q |
9 |
aacagagatatacaatttattaaattggtagagcacgttaaaaacaacacatattcaacattgttaaaactgaaataaaagaa |
91 |
Q |
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| T |
16986015 |
aacagagatatccaatt-attaaattggtagagcacgttaaaaacaacacatattcaacattgctaaaactgaaatagaagaa |
16986096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 17979053 - 17979132
Alignment:
| Q |
25 |
ttattaaattggtagagcacgttaaaaacaacacatattcaacattgttaaaactgaaataaaagaatctgcgaactttta |
105 |
Q |
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| T |
17979053 |
ttattaaattggtagagtacgttaaaa-caacacaaattcaaaattgttaaaactgaaatagaagaatatgtgaactttta |
17979132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 17972334 - 17972413
Alignment:
| Q |
25 |
ttattaaattggtagagcacgttaaaaacaacacatattcaacattgttaaaactgaaataaaagaatctgcgaactttta |
105 |
Q |
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| T |
17972334 |
ttattaaactggtagagtacgttaaaa-caacacaaattcaacattgctaaaactgaaatagaagaatatgtgaactttta |
17972413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 1905431 - 1905488
Alignment:
| Q |
28 |
ttaaattggtagagcacgttaaaaacaacacatattcaacattgttaaaactgaaata |
85 |
Q |
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| T |
1905431 |
ttaaattggtagagtacattaaaaacaacacaaattcaacattgttaaaactaaaata |
1905488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 16986854 - 16986899
Alignment:
| Q |
335 |
tttgttaagttatatgttcaaaataccaacaacacaatcacacgtg |
380 |
Q |
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| T |
16986854 |
tttgttaagttatatgttcaaaataccaaccacacaatgacacgtg |
16986899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 40787335 - 40787232
Alignment:
| Q |
30 |
aaattggtagagcacgttaaaaacaacacatattcaacattgttaaaactgaaataaaagaatctgcgaacttttagtatatgatttattctttatgtat |
129 |
Q |
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| T |
40787335 |
aaattggaagagtatgttaaaaacaaaataaattcaacaatactaaagctgaaatagaagaatttatgaacttttaatataggatttaat-tttatgtat |
40787237 |
T |
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| Q |
130 |
gtaat |
134 |
Q |
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||||| |
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| T |
40787236 |
gtaat |
40787232 |
T |
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