View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_83 (Length: 386)
Name: NF10481A_low_83
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 14127023 - 14127387
Alignment:
| Q |
8 |
caatgttaaggaagcagacttggaagatactcacgtaacctggatctttaatcactagattactcaaagctagatacttccccaattaatagtgattatt |
107 |
Q |
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| T |
14127023 |
caatgttaaggaagcagacgtggaagatactcacgtaacctggatctttaatcactagactactcaaagctagatacttccccaat----agtgattatt |
14127118 |
T |
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| Q |
108 |
ttgctgcaggcacgggacacaacccaagtttcatttggcggagtatttggagtgttaaaccagtactgcgaagcggattcagacggaaaattggaacggg |
207 |
Q |
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| T |
14127119 |
ttgctgcaggcacgggacacaacccatgtttcatttggcggagtatttggagtgttaaaccagtactgcaaagcggattcagacggaaaattggaacggg |
14127218 |
T |
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| Q |
208 |
aaccaacatatcagtttgggatccattttggattcgaggtgggaactctatccctccacctccaataatgatccctgatatcccatctcctaaggcagcc |
307 |
Q |
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| T |
14127219 |
aaccaacataccagtttgggatccattttggattcgaggtgggaactctatccctccacctccaataatgatccctgatatcccgtcacctaatgcagcc |
14127318 |
T |
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| Q |
308 |
caacacaaatcccctcaaattaatcaatcatgtttatgcatctatttatagaaaatgttgttgatgtcc |
376 |
Q |
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| T |
14127319 |
caacacaaagcccctcaaattaatcaatcatgtttatgcatctatttatagaaaatgtcgatgatgtcc |
14127387 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 28810036 - 28809981
Alignment:
| Q |
28 |
tggaagatactcacgtaacctggatctttaatcactagattactcaaagctagata |
83 |
Q |
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| T |
28810036 |
tggaaaatactcacgcaacctgaatctttaatcgctagattattcaaagctagata |
28809981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 6769811 - 6769892
Alignment:
| Q |
8 |
caatgttaaggaagcagacttggaagatactcacgtaacctggatctttaatcactagattactcaaagctagatacttccc |
89 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||| || || ||||||| |||| ||||||||| ||| ||||| |
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| T |
6769811 |
caatgttagggaagcagacttggaagattctcacacaacctgactcattgatcactaaattattcaaagctaaatatttccc |
6769892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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