View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_84 (Length: 386)
Name: NF10481A_low_84
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_84 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 83 - 381
Target Start/End: Original strand, 35742816 - 35743114
Alignment:
| Q |
83 |
agatcctcgtactcttcaaaaaagtcatcactaaaccaaagtcgtggcgctttagtccacttatacctccactgtttagacaaaatactagtcccaacta |
182 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742816 |
agatcctcgtactcttcaaaaaagtcctcactaaaccaaagtcgtggggctttagtccacttatacctccactgtttagacaaaatactagtcccaacta |
35742915 |
T |
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| Q |
183 |
ggtctttgatgtccaagtgtgacaggacgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataag |
282 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742916 |
ggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatcctcttgatcggaaagagtcataag |
35743015 |
T |
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| Q |
283 |
tgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgcaacacaagaaatatcagaagagtcaatgcaaaatct |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743016 |
tgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgcaacacaagaaatatcagaagagtcaatgcaaaatct |
35743114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 35749178 - 35749425
Alignment:
| Q |
83 |
agatcctcgtactcttcaaaaaagtcatcactaaaccaaagtcgtggcgctttagtccacttatacctccactgtttagacaaaatactagtcccaacta |
182 |
Q |
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||||||| |||||| |||||| |||| |||| |||||||||| |||| ||| ||| ||| |||||||||| | ||| |||||||||||||||| ||||| |
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| T |
35749178 |
agatccttgtactcgtcaaaatagtcttcaccaaaccaaagttgtggggctgaagttcacatatacctccaattttttgacaaaatactagtcctaacta |
35749277 |
T |
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| Q |
183 |
ggtctttgatgtccaagtgtgacaggacgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat----------cctcttgatcggaaa |
272 |
Q |
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| T |
35749278 |
ggtctttgatgtacaagcgtgctaggatatcatcaataacattacatggtaagtcactgattcgatcaatgtgatcatgattggccttcttg-ttagaca |
35749376 |
T |
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| Q |
273 |
gagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac |
321 |
Q |
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| T |
35749377 |
gagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac |
35749425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 35739703 - 35739741
Alignment:
| Q |
206 |
aggacgccgtcaatgacattgcatggtaagtcactgatt |
244 |
Q |
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| T |
35739703 |
aggatgccgtcaatggcattgcatggtaagtcactgatt |
35739741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 3613 - 3733
Alignment:
| Q |
138 |
tccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggacgccgtcaatgacattgcatggtaagtc |
237 |
Q |
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| T |
3613 |
tccacatatacctccactttctagacagaagactggtactaactagctcttgaatgttcaagcgttctaggatgccatcaatgacattacatggtaagtc |
3712 |
T |
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| Q |
238 |
actgattcgatcaatttgatc |
258 |
Q |
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| T |
3713 |
actgattcgatcaatgtgatc |
3733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 40011146 - 40011283
Alignment:
| Q |
121 |
aagtcgtggcgctttagtccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggacgccgtcaatg |
220 |
Q |
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| T |
40011146 |
aagtcgtgggactgtaatccacatatacctccactttctagacagaacactagtcctcactaggtctcgggcgttcaagtgttctaggatgccatcgatg |
40011245 |
T |
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| Q |
221 |
acattgcatggtaagtcactgattcgatcaatttgatc |
258 |
Q |
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| T |
40011246 |
acattacttggtaagtcactgattcgatcaatgtgatc |
40011283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
| Q |
272 |
agagtcataagtgaactacaaattcaagcaa |
302 |
Q |
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| T |
16865311 |
agagtcataagtgaactacaaattcaagcaa |
16865281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 16865380 - 16865344
Alignment:
| Q |
215 |
tcaatgacattgcatggtaagtcactgattcgatcaa |
251 |
Q |
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| T |
16865380 |
tcaatgacattacttggtaagtcactgattcgatcaa |
16865344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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