View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_88 (Length: 384)
Name: NF10481A_low_88
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_88 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Complemental strand, 12844054 - 12843677
Alignment:
| Q |
7 |
tccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcc |
106 |
Q |
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| T |
12844054 |
tccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcc |
12843955 |
T |
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| Q |
107 |
cgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcaggtatgattccggtccgtctctgcaattttctccgtcat |
206 |
Q |
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| T |
12843954 |
cgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctctcgccgatatgattccggttagtctctgcaactttctccgtcat |
12843855 |
T |
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| Q |
207 |
cctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctga |
306 |
Q |
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| T |
12843854 |
cctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctga |
12843755 |
T |
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| Q |
307 |
ggcattacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgtgaggaattggcttgatttcgaag |
384 |
Q |
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| T |
12843754 |
ggcattacaggttcaatggtgaaaatctttcacgtgaatcgataaatgtaattgtgaggaattggcttgatttcgaag |
12843677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 42 - 380
Target Start/End: Original strand, 12861462 - 12861800
Alignment:
| Q |
42 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
141 |
Q |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
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| Q |
142 |
gtcttatcttccacctctctcgcgcaggtatgattccggtccgtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
241 |
Q |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
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| Q |
242 |
tgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgt |
341 |
Q |
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| T |
12861662 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattacgagttcaatggtgaagctctttcacgt |
12861761 |
T |
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| Q |
342 |
gaatcgatgaatgtaattgtgaggaattggcttgatttc |
380 |
Q |
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| T |
12861762 |
ttatcgatggatgaaattgtgaggaaatgtcttggtttc |
12861800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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