View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_89 (Length: 382)
Name: NF10481A_low_89
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_89 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 4652888 - 4653269
Alignment:
| Q |
1 |
tcgagtttcgtgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggt |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652888 |
tcgactttcatgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggt |
4652987 |
T |
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| Q |
101 |
tactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652988 |
tactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaagc |
4653087 |
T |
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| Q |
201 |
acactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattatcattgatgtcgacgtgtctatgtaagtacat |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4653088 |
acactcgtcagtgcccgtcatgacactaacacatgtgattgtactcatttaaataatttttcaaattatcattgatgtcgacgtgtctatggaagtacat |
4653187 |
T |
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| Q |
301 |
gatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattttttcaatatattactga |
382 |
Q |
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| T |
4653188 |
gatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattttttcaatatattactga |
4653269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 17426931 - 17427103
Alignment:
| Q |
12 |
gtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatcc |
111 |
Q |
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| T |
17426931 |
gtttaggatgcaaaaacaaaccattttaccgtgttatggctgctgatagcagatctccgagagatggaaagcacctcgaagttcttggttactataatcc |
17427030 |
T |
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| Q |
112 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatact |
184 |
Q |
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| T |
17427031 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagttattaatact |
17427103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 17428840 - 17428908
Alignment:
| Q |
201 |
acactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattat |
269 |
Q |
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| T |
17428840 |
acactcgtaagtgcccgttatgacactaacacatgtgattgcattcaattagttaattttttaaattat |
17428908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 24362371 - 24362338
Alignment:
| Q |
338 |
aatgcgattacattcaattaattcattttttcaa |
371 |
Q |
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| T |
24362371 |
aatgtgattacattcaattaattcattttttcaa |
24362338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 10764088 - 10764120
Alignment:
| Q |
339 |
atgcgattacattcaattaattcattttttcaa |
371 |
Q |
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| T |
10764088 |
atgcgattacgttcaattaattcattttttcaa |
10764120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 371
Target Start/End: Original strand, 1118412 - 1118440
Alignment:
| Q |
343 |
gattacattcaattaattcattttttcaa |
371 |
Q |
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| T |
1118412 |
gattacattcaattaattcattttttcaa |
1118440 |
T |
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