View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_95 (Length: 376)
Name: NF10481A_low_95
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_95 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 434839 - 434480
Alignment:
| Q |
13 |
ggacatcatggatctcattttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttca |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
434839 |
ggacatcatggatctcattt-aagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttca |
434741 |
T |
|
| Q |
112 |
gttaattagtgtttttgttagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctc |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
434740 |
gttaattagtgtttttgtgagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctc |
434641 |
T |
|
| Q |
212 |
aattgacttcgactcattgaatacaagggattcaaattaattgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
434640 |
aattgacttcgactcattgaatacaagggattcaaattaattgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattt |
434541 |
T |
|
| Q |
312 |
tcactgaaatgtgtatttatggataaaggattaatatttgacatgttaacataaaatgaag |
372 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
434540 |
tcactgaaatgtgtaattatggattaaggattaatatttgacatgttaacataaaatgaag |
434480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 253 - 376
Target Start/End: Complemental strand, 43485786 - 43485663
Alignment:
| Q |
253 |
tgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtatttatggataaaggattaatatttga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |||||| || ||||| ||||||||| |||||| |
|
|
| T |
43485786 |
tgaagattagttataccattgccattgaattgagctttagtctcaactgaatcaaatttacactgagctgtgtaattctggattaaggattaaaatttga |
43485687 |
T |
|
| Q |
353 |
catgttaacataaaatgaagtttg |
376 |
Q |
| |
|
||||||| |||||| ||||||||| |
|
|
| T |
43485686 |
catgttaccataaattgaagtttg |
43485663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 47870681 - 47870644
Alignment:
| Q |
282 |
ttgggcgttagtctcaattgaatcaaattttcactgaa |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47870681 |
ttgggctttagtctcaattgaatcaaattttcactgaa |
47870644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 17512780 - 17512942
Alignment:
| Q |
133 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcattgaa |
232 |
Q |
| |
|
|||| ||||| |||||| |||||||| || | |||||||||||||| | | |||||| |||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattgattttaacttattgaa |
17512879 |
T |
|
| Q |
233 |
tacaagggattcaaattaattgaagattag--ttataccattgccattgaattgggcgttagt |
293 |
Q |
| |
|
|||||||||||| | |||||| ||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
17512880 |
gccaagggattcaatctcattgaacattagttttgtaccattgccattgaattaggcgttagt |
17512942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
54 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University