View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_99 (Length: 373)
Name: NF10481A_low_99
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 33662297 - 33662664
Alignment:
| Q |
1 |
gaataagaatttagtatcatatggttgtgattttaatttgttctaggaagaaaagaatatggtttttccggaacttctttgccgtcaataaaattcgaca |
100 |
Q |
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| T |
33662297 |
gaataagaatttagtatcatatggttgtgattttaatttgttctaggaagaaaagaatatggtttttccggaacttctttgccgtcaataaaattcgaca |
33662396 |
T |
|
| Q |
101 |
ttcgtcgatgtgatattaactaattgatagggacaattcattgtaatatgtatagtcgaggtttaaactcggacactccactaatttatctataagagat |
200 |
Q |
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| T |
33662397 |
ttcgtcgatgtgatattaactaattgatagggacaattcattgtaatatgtatagtcgaggtttgaactcggacactccactaatttatctataagagat |
33662496 |
T |
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| Q |
201 |
gaatttctaacgataaaatgctaaaatgtttgaagttaaagtttaaacaactcattaattaaaaaatgataaacaactatctc-nnnnnnnnggggcaca |
299 |
Q |
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| T |
33662497 |
gaatttctaacgataaaatgctaaaatgtttgaagttaaagtttaaacaactcattaattaaaaaatgataaacaactatctctttttttttggggtaca |
33662596 |
T |
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| Q |
300 |
ttaaacaactatatctaccttaatttgaataatgaaagcaacaattctgcggatatgatagtcctaag |
367 |
Q |
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| T |
33662597 |
ttaaacaactatatctaccttaatttgaataatgaaagcaacaattctgcggatatgatagtcctaag |
33662664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 33672083 - 33672130
Alignment:
| Q |
300 |
ttaaacaactatatctaccttaatttgaataatgaaagcaacaattct |
347 |
Q |
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||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
33672083 |
ttaaacaactatatctaccttaaatggaataatgaaagaaacaattct |
33672130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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