View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10482_high_2 (Length: 347)
Name: NF10482_high_2
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10482_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 42309434 - 42309752
Alignment:
| Q |
21 |
tgaatatgggaaaacattattgagataaagaacttacttaacagccccgtatccaattgcctcggctgttttgtcaatctcttcctctgtccaaccttta |
120 |
Q |
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| T |
42309434 |
tgaatatgggaaaacattattgagataaagaacttacttaacagccccatatccaattgcctcggctgttttgtcaatctcttcctctgtccaaccttta |
42309533 |
T |
|
| Q |
121 |
gcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatcttaaacagaaacttcatttctttgattttgga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309534 |
gcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatcttaaacagaaacttcatttctttgattttgga |
42309633 |
T |
|
| Q |
221 |
tcgcacgaaggaataataattgcaataggcaactcttacttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatcaacca |
320 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309634 |
tcgcacgaaggaataataattgcaataggcaattcttacttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatcaacca |
42309733 |
T |
|
| Q |
321 |
atcaaacagtctctctgct |
339 |
Q |
| |
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||| ||||||||| ||||| |
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| T |
42309734 |
atctaacagtctcgctgct |
42309752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 333
Target Start/End: Complemental strand, 51569345 - 51569028
Alignment:
| Q |
25 |
tatgggaaaacattattgagataaagaacttacttaacagccccgtatccaattgcctcggctgttttgtcaatctcttcctctgtccaacctttagcat |
124 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||| |||||||||||||| |||||| ||||||||| |
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| T |
51569345 |
tatgggaaagcattattgagataaagaacttacttaacagctccatatccaattgcctctgaagttttttcaatctcttcctccgtccaatctttagcat |
51569246 |
T |
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| Q |
125 |
tatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatctt----aaacagaaacttcatttctttgattttgga |
220 |
Q |
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|||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |
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| T |
51569245 |
tatctagatgaacataggatttagaaggttaactgtctaatgcataatatcagttccatagatcttcaacaaacagaaacttcatttctttgattctggt |
51569146 |
T |
|
| Q |
221 |
tcgcacgaagg----aataataattgcaataggcaactcttac-ttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatc |
315 |
Q |
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| ||| ||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
51569145 |
ttgcatgaaggaagaaataaaaattgcaataagcaactggtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatc |
51569046 |
T |
|
| Q |
316 |
aaccaatcaaacagtctc |
333 |
Q |
| |
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||| |||| ||||||||| |
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| T |
51569045 |
aactaatcgaacagtctc |
51569028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 26 - 339
Target Start/End: Original strand, 47973578 - 47973900
Alignment:
| Q |
26 |
atgggaaaacattattgagataaagaacttacttaacagccccgtatccaattgcctcggctgttttgtcaatctcttcctctgtccaacctttagcatt |
125 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||| |||||| |||||||||| |
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| T |
47973578 |
atgggaaaacgttattgagatacagaacttacttcacagccccatatccaattgcctcggatgttttctcaatctcttcctccgtccaatctttagcatt |
47973677 |
T |
|
| Q |
126 |
atctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatctt----aaacagaaacttcatttctttgattttggat |
221 |
Q |
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||||||||||||| ||| |||||||||||||||||| ||||| |||| ||||| |||| ||||| ||||||||||||||||| ||||||| ||| | |
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| T |
47973678 |
atctagatgaacatgggatttagaaggttaactgtctaatgcacaatatcagttccatagatcttccacaaacagaaacttcatttatttgattctggct |
47973777 |
T |
|
| Q |
222 |
cgcacgaagg----aataataattgcaataggcaactcttac-ttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatca |
316 |
Q |
| |
|
| || ||||| ||||| ||||||||||||||| | ||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
47973778 |
cacatgaaggaagaaataaaaattgcaataggcaaatggtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatca |
47973877 |
T |
|
| Q |
317 |
accaatcaaacagtctctctgct |
339 |
Q |
| |
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||||||| ||||||||| ||||| |
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| T |
47973878 |
accaatcgaacagtctcgctgct |
47973900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 34032016 - 34031955
Alignment:
| Q |
260 |
ttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatcaaccaa |
321 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||||| |
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| T |
34032016 |
ttaccacgttcaagaagggcagttttacagcgccttttagcttcatcaagcaaatcaaccaa |
34031955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 34032213 - 34032159
Alignment:
| Q |
53 |
cttacttaacagccccgtatccaattgcctcggctgttttgtcaatctcttcctc |
107 |
Q |
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||||||||||||||||||| ||||||||||| | |||| | |||||||| ||||| |
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| T |
34032213 |
cttacttaacagccccgtaaccaattgcctctgatgttctctcaatctcctcctc |
34032159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 19749192 - 19749246
Alignment:
| Q |
53 |
cttacttaacagccccgtatccaattgcctcggctgttttgtcaatctcttcctc |
107 |
Q |
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||||||||||||||||||| ||||||||||| | |||||| |||||||| ||||| |
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| T |
19749192 |
cttacttaacagccccgtaaccaattgcctctgatgttttctcaatctcctcctc |
19749246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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