View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10482_low_1 (Length: 441)
Name: NF10482_low_1
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10482_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 9268703 - 9269118
Alignment:
| Q |
12 |
caaaggaacaatataatgtttggctttccacgctttaggacaaactatactcctcaatcgtccaaccaattggagatctgcatcgttttcgatgccacat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9268703 |
caaagaaacaatataatgtttggctttccacactttaggacaaactatactcctcaatcgtccaaccaattggagatttgcatcgttttcgatgccacat |
9268802 |
T |
|
| Q |
112 |
tcgcgaagactctgttctagctgaagctgttttccttcgtatattaatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaaggg |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9268803 |
tcgcgaagactctattctagctgaagctgttttgcttcgtatattaatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaaggg |
9268902 |
T |
|
| Q |
212 |
attcaac--nnnnnnnncgctagaagcacgaatcactaaggtgttactgttccacatgcggacgaagaattgtaatttcgatgatttcgtttctgagacc |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9268903 |
attcaacttttttttttcgctagaagcacgaatcactaaggtgttactgttccacatgcggacgaagaattgtaatttcgatgatttcgtttctgagacc |
9269002 |
T |
|
| Q |
310 |
attttcatcttcgaggacgagcatgtaagttttgagaagtggtttttgccgtggttggccgtgagagttttggtggtctgtgacatttgccggtgttaat |
409 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9269003 |
tttttcatcttcgaagacgagcatgtgagttttgagaagtggtttttgccgtggttggccgtgagagttttggtggtctgtgacatttgccggtgttaat |
9269102 |
T |
|
| Q |
410 |
cgtgacggcggagagg |
425 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9269103 |
cgtgacggcggagagg |
9269118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 9258707 - 9259095
Alignment:
| Q |
12 |
caaaggaacaatataatgtttggctttccacgctttaggacaaactatactcctcaatcgtccaaccaattggagatctgcatcgttttcgatgccacat |
111 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||| |||||||||| ||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
9258707 |
caaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcgaccaaccaattgaagatttgcatcgttttcgatgccgcat |
9258806 |
T |
|
| Q |
112 |
tcgcgaagactctgttctagctgaagctgttttccttcgtatattaatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaaggg |
211 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||| | ||||||||||||||||| | |
|
|
| T |
9258807 |
tcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcggaattctggttttagacgaaatttgttcgagaagcg |
9258906 |
T |
|
| Q |
212 |
attcaacnnnnnnnncgctagaagcacgaatcactaaggtgttactgttcca---catgcggacgaagaattgtaatttcgatgatttcgtttctgagac |
308 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
9258907 |
attcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggacgaagaattgtaatttcgatgatttcgttttcgtgat |
9259006 |
T |
|
| Q |
309 |
cattttcatcttcgaggacgagcatgtaagttttgagaagtggtttttgccgtggttggccgtgagagttttggtggtctgtgacattt |
397 |
Q |
| |
|
| ||||||||||||| |||||| |||| ||||||| | |||||||||||| |||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
9259007 |
ctttttcatcttcgaagacgaggatgtgagttttggggagtggtttttgcggtggttggccgtgagaattttggtggttggtgacattt |
9259095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 9250676 - 9250829
Alignment:
| Q |
55 |
actatactcctcaatcgtccaaccaattggagatctgcatcgttttcgatgccacattcgcgaagactctgttctagctgaagctgttttccttcgtata |
154 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| || |||||||||||||| |||| || |||||||||| | |||||||||||||||| | ||| | |
|
|
| T |
9250676 |
actatactcctcaattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtaga |
9250775 |
T |
|
| Q |
155 |
ttaatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaa |
208 |
Q |
| |
|
| |||||||||| |||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9250776 |
tcaatcgttgatattcaataggaattttggttttggatgaaatttgttggagaa |
9250829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 9238159 - 9238311
Alignment:
| Q |
56 |
ctatactcctcaatcgtccaaccaattggagatctgcatcgttttcgatgccacattcgcgaagactctgttctagctgaagctgttttccttcgtatat |
155 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||| || |||||||||||||| |||| || |||||||||| | |||||||||||||||| | ||| || |
|
|
| T |
9238159 |
ctatactcctcaattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagat |
9238258 |
T |
|
| Q |
156 |
taatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaa |
208 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9238259 |
caatcgttgatattcaataggaattttggttttggatgaaatttgttggagaa |
9238311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University