View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10482_low_12 (Length: 248)
Name: NF10482_low_12
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10482_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 27633814 - 27634053
Alignment:
| Q |
1 |
atcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatattattaaaatcaaa |
100 |
Q |
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| T |
27633814 |
atcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacata--gtaatcacacacattcataaatattattaaaatcaaa |
27633911 |
T |
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| Q |
101 |
tataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagtag |
200 |
Q |
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| T |
27633912 |
tataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacctcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagtag |
27634011 |
T |
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| Q |
201 |
gtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
242 |
Q |
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| T |
27634012 |
gtgttgttgaagatgaagctccaatgttgttttcctctgtgc |
27634053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34518632 - 34518871
Alignment:
| Q |
1 |
atcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatattattaaaatcaaa |
100 |
Q |
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| T |
34518632 |
atcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacata--gtaatcacacacatgcataaatattattaaaatcaaa |
34518729 |
T |
|
| Q |
101 |
tataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagtag |
200 |
Q |
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| T |
34518730 |
tataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaactttattcatcatgcgaatatcaaaaacaggaatatcttgtgacacctcagtag |
34518829 |
T |
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| Q |
201 |
gtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
242 |
Q |
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| T |
34518830 |
gtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
34518871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 34527707 - 34527799
Alignment:
| Q |
68 |
tcacacacatacataaatattattaaaatcaaat-ataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcat |
159 |
Q |
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||||||||||| | ||| |||||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| |||||| |||| |
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| T |
34527707 |
tcacacacataaagaaagattattaaaatcaaattaaaaaaaacaacctttctcatctccagaaatactgtgatcatcaacctcattcgtcat |
34527799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34527607 - 34527656
Alignment:
| Q |
1 |
atcaatctattctataaaatacatccaagaagaacaaaattgatatatca |
50 |
Q |
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|||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
34527607 |
atcaatctcttcaataaaatacatccaagaagaataaaattgatatatca |
34527656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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