View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10482_low_13 (Length: 239)
Name: NF10482_low_13
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10482_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3967082 - 3966858
Alignment:
| Q |
1 |
ttcggacgcacttttgcgacgcctctcgttatgtccagccaaacgcctcctacaactcctttttaagtcatcaaattctgatacctcatgaaacctatag |
100 |
Q |
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| T |
3967082 |
ttcggatgcacttttgcgacgcctctcgttatgtccagctaaacgccttctacaactcctttttaagtcatcaaattctgatacctcatgaaacctatag |
3966983 |
T |
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| Q |
101 |
aaaaaccatattccaaagctataagttaattaattagttgtaaatcatgggaatgtactcttgactattgctcctatatatgaagaacattgc--atgtg |
198 |
Q |
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| T |
3966982 |
aaaaaccatattccaaagctataagttaattaattagttgtaaatcatgggaatgtactcttgactattgctcctatatatgaagaacattgcatatgtg |
3966883 |
T |
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| Q |
199 |
ttttggttaatttagtatgcacaag |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
3966882 |
ttttggttaatttagtatgcacaag |
3966858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 35174745 - 35174820
Alignment:
| Q |
8 |
gcacttttgcgacgcctctcgttatgtccagccaaacgcctcctacaactcctttttaagtcatcaaattctgata |
83 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||| || ||||| |||||| |||||||||||| |||| |
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| T |
35174745 |
gcacttttgcgacgcctctcattatgcccggccaaacgccttctgcaacttctttttgcgtcatcaaattcagata |
35174820 |
T |
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