View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10482_low_14 (Length: 239)
Name: NF10482_low_14
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10482_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34518144 - 34517919
Alignment:
| Q |
1 |
ttaatctattgattgtaaaatgtcatgcatgtggttctgacattgaagtttcaattggccg-gaccgttcagtagattatgatgcatataatacggtatg |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34518144 |
ttaatctattgattgtaaaatgtcatgcatgtggttccgacattgaagtttcaattggccgtgaccgttcagtagattatgatgcatataatacggtatg |
34518045 |
T |
|
| Q |
100 |
gcctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34518044 |
acctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttggatttggtttcatattccgatatttcttgatt |
34517945 |
T |
|
| Q |
200 |
gaatgataactggattattgatattg |
225 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
34517944 |
gaatgataactggattattgatattg |
34517919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27633361 - 27633136
Alignment:
| Q |
1 |
ttaatctattgattgtaaaatgtcatgcatgtggttctgacattgaagtttcaattggccg-gaccgttcagtagattatgatgcatataatacggtatg |
99 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27633361 |
ttaatctattgattgtaaaatgtgatgcatgtggttccgacattgaagtttcaattggccgtgaccgttcagtagattatgatgcatataatacggtatg |
27633262 |
T |
|
| Q |
100 |
gcctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27633261 |
acctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgatt |
27633162 |
T |
|
| Q |
200 |
gaatgataactggattattgatattg |
225 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
27633161 |
gaatgataactggattattgacattg |
27633136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27617770 - 27617545
Alignment:
| Q |
1 |
ttaatctattgattgtaaaatgtcatgcatgtggttctgacattgaagtttcaattggccg-gaccgttcagtagattatgatgcatataatacggtatg |
99 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| || ||||||||||||||| | |||| |||||||| |||||||||||||||||||||| || ||| |
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|
| T |
27617770 |
ttaatctaatgattgtaaaatgtcttgtatgtgatttcaacattgaagtttcaactagccgtgaccgttcggtagattatgatgcatataatatggcatg |
27617671 |
T |
|
| Q |
100 |
gcctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgatt |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
27617670 |
acctcctgaattttataatttatgtttagcagaacttgttactgaagtatttctttgggtttttgttagatttggttttcttttccgatatttcttgatt |
27617571 |
T |
|
| Q |
200 |
gaatgataactggattattgatattg |
225 |
Q |
| |
|
|||||||||| ||| |||||| |||| |
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|
| T |
27617570 |
gaatgataacgggactattgacattg |
27617545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 34527159 - 34526946
Alignment:
| Q |
1 |
ttaatctattgattgtaaaatgtcatgcatgtggttctgacattgaagtttcaattggccggaccgttcagtagattatgatgcatataatacggtatgg |
100 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| || ||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |
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|
| T |
34527159 |
ttaatctaccgattgtaaaatgtcctgtatgtgatttcaacattgaagtttcaactg-----accgttcagtagattatgatgcatataatatggtatga |
34527065 |
T |
|
| Q |
101 |
cctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgattg |
200 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
34527064 |
cctcctgaatttcataatttatgtttagcagaacttgttactgaagtatttctttgggtttttgttagatttggtttcattttccgatatttcatgattg |
34526965 |
T |
|
| Q |
201 |
aatgataactggattattg |
219 |
Q |
| |
|
|||||||||| || ||||| |
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|
| T |
34526964 |
aatgataactagactattg |
34526946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34506555 - 34506330
Alignment:
| Q |
1 |
ttaatctattgattgtaaaatgtcatgcatgtggttctgacattgaagtttcaattggccg-gaccgttcagtagattatgatgcatataatacggtatg |
99 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| || |||||||||||||||| | |||| |||||||| |||||||||||||||||||||| || ||| |
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| T |
34506555 |
ttaatctaacgattgtaaaatgtcctgtatgtgatttcgacattgaagtttcaactagccgtgaccgttcggtagattatgatgcatataatatggcatg |
34506456 |
T |
|
| Q |
100 |
gcctcctgaattttataacttatgtttagcagaacttatttctgaagtatttctttgagtttttgttagatttggtttcatattccgatatttcttgatt |
199 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |
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| T |
34506455 |
acctcctgagttttataatttatgtttagcagaacttgttactgaagtatttatttgggtttttgttagatttggttttcttttccgatatttcttgatt |
34506356 |
T |
|
| Q |
200 |
gaatgataactggattattgatattg |
225 |
Q |
| |
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||||||||| ||| |||||| |||| |
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|
| T |
34506355 |
gaatgataatgggactattgacattg |
34506330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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