View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10482_low_8 (Length: 254)

Name: NF10482_low_8
Description: NF10482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10482_low_8
NF10482_low_8
[»] chr4 (17 HSPs)
chr4 (134-196)||(29584864-29584925)
chr4 (158-196)||(20185730-20185768)
chr4 (160-196)||(12624691-12624727)
chr4 (160-196)||(14602729-14602765)
chr4 (160-204)||(28116571-28116615)
chr4 (160-196)||(38136350-38136386)
chr4 (160-204)||(52198794-52198838)
chr4 (161-196)||(5536493-5536528)
chr4 (161-196)||(19654424-19654459)
chr4 (161-196)||(31840094-31840129)
chr4 (161-192)||(56373422-56373453)
chr4 (154-192)||(31486477-31486515)
chr4 (161-202)||(41920106-41920147)
chr4 (221-254)||(50282946-50282979)
chr4 (221-254)||(53596165-53596198)
chr4 (160-196)||(20293738-20293774)
chr4 (160-196)||(25477220-25477256)
[»] chr7 (12 HSPs)
chr7 (129-196)||(48193580-48193646)
chr7 (127-192)||(26201046-26201111)
chr7 (160-196)||(6376207-6376243)
chr7 (126-187)||(21801139-21801200)
chr7 (19-102)||(39175457-39175540)
chr7 (161-204)||(40740946-40740989)
chr7 (160-194)||(26632841-26632875)
chr7 (42-104)||(39175585-39175647)
chr7 (161-190)||(31373778-31373807)
chr7 (160-196)||(20123445-20123481)
chr7 (160-204)||(23876032-23876076)
chr7 (160-192)||(37491697-37491729)
[»] chr8 (17 HSPs)
chr8 (161-207)||(14522668-14522714)
chr8 (139-196)||(14577727-14577783)
chr8 (121-206)||(16644101-16644185)
chr8 (145-190)||(5191629-5191673)
chr8 (160-192)||(31746484-31746516)
chr8 (161-196)||(4273983-4274018)
chr8 (161-204)||(25888591-25888634)
chr8 (161-207)||(2031219-2031265)
chr8 (160-194)||(24962442-24962476)
chr8 (160-194)||(43980660-43980694)
chr8 (127-204)||(3113600-3113676)
chr8 (221-254)||(22594327-22594360)
chr8 (160-200)||(27560-27600)
chr8 (160-196)||(2562805-2562841)
chr8 (160-192)||(22590370-22590402)
chr8 (141-177)||(36309688-36309724)
chr8 (160-196)||(40790784-40790820)
[»] chr1 (14 HSPs)
chr1 (126-196)||(8984734-8984803)
chr1 (129-195)||(20564739-20564804)
chr1 (127-196)||(30898636-30898704)
chr1 (160-196)||(15179404-15179440)
chr1 (160-196)||(38680469-38680505)
chr1 (141-192)||(13723555-13723605)
chr1 (160-194)||(15512856-15512890)
chr1 (160-194)||(28949039-28949073)
chr1 (161-207)||(47643537-47643583)
chr1 (154-192)||(47754719-47754757)
chr1 (221-254)||(16659920-16659953)
chr1 (160-204)||(10842323-10842367)
chr1 (160-196)||(32047436-32047472)
chr1 (160-196)||(52141250-52141286)
[»] chr3 (17 HSPs)
chr3 (160-196)||(11388115-11388151)
chr3 (19-104)||(46493788-46493873)
chr3 (160-204)||(50363021-50363065)
chr3 (140-196)||(52325579-52325634)
chr3 (161-196)||(20945376-20945411)
chr3 (161-204)||(26043014-26043057)
chr3 (161-196)||(51263077-51263112)
chr3 (126-196)||(25750488-25750557)
chr3 (134-196)||(26121301-26121362)
chr3 (160-189)||(37729112-37729141)
chr3 (221-254)||(52255547-52255580)
chr3 (160-196)||(14645965-14646001)
chr3 (164-196)||(23157093-23157125)
chr3 (160-196)||(31531501-31531537)
chr3 (160-196)||(42010862-42010898)
chr3 (160-196)||(46048516-46048552)
chr3 (160-196)||(46435806-46435842)
[»] scaffold0012 (1 HSPs)
scaffold0012 (129-192)||(99895-99957)
[»] scaffold1091 (1 HSPs)
scaffold1091 (126-196)||(1987-2056)
[»] scaffold0013 (1 HSPs)
scaffold0013 (154-204)||(49126-49175)
[»] chr2 (13 HSPs)
chr2 (160-194)||(20361978-20362012)
chr2 (160-204)||(7278679-7278723)
chr2 (160-196)||(17663619-17663655)
chr2 (160-196)||(27297572-27297608)
chr2 (160-204)||(27749507-27749551)
chr2 (160-196)||(44421444-44421480)
chr2 (161-204)||(13477099-13477142)
chr2 (161-196)||(44424591-44424626)
chr2 (154-196)||(2395791-2395833)
chr2 (126-204)||(8667600-8667677)
chr2 (139-192)||(43709893-43709946)
chr2 (139-196)||(26512046-26512102)
chr2 (160-196)||(28265025-28265061)
[»] scaffold0005 (1 HSPs)
scaffold0005 (160-196)||(214613-214649)
[»] chr6 (9 HSPs)
chr6 (121-189)||(3888024-3888091)
chr6 (20-88)||(15587254-15587322)
chr6 (160-196)||(22410918-22410954)
chr6 (160-196)||(31945987-31946023)
chr6 (162-201)||(5084611-5084650)
chr6 (160-194)||(19838926-19838960)
chr6 (161-202)||(11081892-11081933)
chr6 (161-202)||(31536008-31536049)
chr6 (160-196)||(3729384-3729420)
[»] chr5 (11 HSPs)
chr5 (161-204)||(29866185-29866228)
chr5 (161-196)||(38972199-38972234)
chr5 (134-196)||(4378112-4378173)
chr5 (160-206)||(10656587-10656633)
chr5 (160-194)||(27642497-27642531)
chr5 (160-194)||(39690561-39690595)
chr5 (221-254)||(28905473-28905506)
chr5 (221-254)||(28941868-28941901)
chr5 (160-188)||(3559108-3559136)
chr5 (160-196)||(4857571-4857607)
chr5 (160-196)||(18729583-18729619)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 29584864 - 29584925
Alignment:
Q  134 gtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  29584864 gtccatgtatgtaagcaccctttgcatttt-tcacatttcttaagaaaaattgttagtgtaat 29584925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 20185768 - 20185730
Alignment:
Q  158 cattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  20185768 cattttttcacatttcttaagaaaatttgttagtgtaat 20185730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 12624691 - 12624727
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12624691 ttttttcacatttcttaagaaaagttgttagtgtaat 12624727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 14602765 - 14602729
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14602765 ttttttcacatttcttaagaaaagttgttagtgtaat 14602729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 28116615 - 28116571
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||    
T  28116615 ttttttcacattttttaagaaaagttgttagtgtaattaatatgt 28116571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 38136350 - 38136386
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38136350 ttttttcacatttcttaagaaaatttgttagtgtaat 38136386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 52198838 - 52198794
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||    
T  52198838 ttttttcacatttcttaagaaaagttgtcagtgtaattaatatgt 52198794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 5536493 - 5536528
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5536493 tttttcacatttcttaagaaaaattgtcagtgtaat 5536528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 19654424 - 19654459
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19654424 tttttcacatttcttaagaaaaactgttagtgtaat 19654459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 31840094 - 31840129
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31840094 tttttcaaatttcttaagaaaaattgttagtgtaat 31840129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 56373453 - 56373422
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtg 192  Q
    ||||||||||||||||||||||||||||||||    
T  56373453 tttttcacatttcttaagaaaaattgttagtg 56373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 31486477 - 31486515
Alignment:
Q  154 tttgcattttttcacatttcttaagaaaaattgttagtg 192  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  31486477 tttgctttttttcacatttcttaagaaaagttgttagtg 31486515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 41920147 - 41920106
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatat 202  Q
    |||||||||||||||||||||| ||||||||| ||| |||||    
T  41920147 tttttcacatttcttaagaaaagttgttagtgcaattaatat 41920106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 50282979 - 50282946
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  50282979 gttcttttggtcccttaagtatttatttggtatc 50282946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 53596198 - 53596165
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  53596198 gttcttttggtcccttaagtatttatttggtatc 53596165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 20293738 - 20293774
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  20293738 ttttttcacatttcttaagaaaagttgtcagtgtaat 20293774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 25477220 - 25477256
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  25477220 ttttttcacatttcttaagaaaagttgtcagtgtaat 25477256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 48193580 - 48193646
Alignment:
Q  129 cctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||| ||||||||||||||||  | |||||||||| |||||||| |||||||||||||||||||||||    
T  48193580 cctccgtccatgtatgtaagccccctttgcatttt-tcacattttttaagaaaaattgttagtgtaat 48193646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 26201111 - 26201046
Alignment:
Q  127 tccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtg 192  Q
    |||||| |||| | |||||||||||| |||||||||||||| |||||||||||||| || ||||||    
T  26201111 tccctccgtccctatatgtaagcatcctttgcattttttcatatttcttaagaaaagttattagtg 26201046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 6376243 - 6376207
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  6376243 ttttttcacatttcttaagaaaaattgttagtgtaat 6376207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 21801200 - 21801139
Alignment:
Q  126 ctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgt 187  Q
    |||||||||||| ||||||||||   | |||| |||||||||||||||||||||||| ||||    
T  21801200 ctccctctgtccttgtatgtaagtcccttttgtattttttcacatttcttaagaaaagttgt 21801139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 39175457 - 39175540
Alignment:
Q  19 aaacatgacgaaggataagatgatcctcatgtcgagcaagagcgtttatcatagaagaattatatgagaatataatattaactg 102  Q
    |||||| |||||||| | || | |||||||||||| ||||||| ||||||| |||||||| |||||| || ||| |||| ||||    
T  39175457 aaacattacgaaggacaggacggtcctcatgtcgaacaagagcatttatcaaagaagaatgatatgataaaatactatttactg 39175540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 40740946 - 40740989
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||||||||||||||||| |||||| |||||| |||||||    
T  40740946 tttttcacatttcttaagaaaagttgttaatgtaattaatatgt 40740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 26632841 - 26632875
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||| |||||||||||||||||||||    
T  26632841 ttttttcacattttttaagaaaaattgttagtgta 26632875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 39175585 - 39175647
Alignment:
Q  42 tcctcatgtcgagcaagagcgtttatcatagaagaattatatgagaatataatattaactgaa 104  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||| || ||| |||| ||||||    
T  39175585 tcctcatgtcgaacaagagcatttatcaaagaagaatgatatgataaaatactatttactgaa 39175647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 31373807 - 31373778
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttag 190  Q
    ||||||||||||||||||||||||||||||    
T  31373807 tttttcacatttcttaagaaaaattgttag 31373778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 20123445 - 20123481
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  20123445 ttttttcacatttcttaagaaaagttgtcagtgtaat 20123481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 23876032 - 23876076
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||    
T  23876032 ttttttcacatttcttaaaaaaagttgttagtgtagttaatatgt 23876076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 37491729 - 37491697
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtg 192  Q
    ||||||||||||||||||||||| |||||||||    
T  37491729 ttttttcacatttcttaagaaaagttgttagtg 37491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 14522714 - 14522668
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgtatg 207  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  14522714 tttttcacatttcttaagaaaaattgttagtgtaattaatgtgtatg 14522668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 14577783 - 14577727
Alignment:
Q  139 tgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||    
T  14577783 tgtatgtaagcatcctttacattttt-cacatttcttaagaaaagttgttagtgtaat 14577727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 16644185 - 16644101
Alignment:
Q  121 atatgctccctctgtccatgtatgtaagca-tcatttgcattttttcacatttcttaagaaaaattgttagtgtaatgaatatgtat 206  Q
    |||| |||| || |||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  16644185 atatactccttccgtccctgtatgtaagcactcatt-gcattttt-cacatttcttaagaaaagttgttagtgtaattaatgtgtat 16644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 5191673 - 5191629
Alignment:
Q  145 taagcatcatttgcattttttcacatttcttaagaaaaattgttag 190  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  5191673 taagcatcttttgcattttt-cacatttcttaagaaaaattgttag 5191629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 31746516 - 31746484
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtg 192  Q
    |||||||||||||||||||||||||||||||||    
T  31746516 ttttttcacatttcttaagaaaaattgttagtg 31746484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 4274018 - 4273983
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4274018 tttttcacatttcttaagaaatattgttagtgtaat 4273983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 25888591 - 25888634
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||    
T  25888591 ttttttacatttcttaagaaaagttgttagtgtaattaatatgt 25888634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 2031219 - 2031265
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgtatg 207  Q
    ||||||| ||||||| |||||||||||||||| ||| ||||||||||    
T  2031219 tttttcatatttcttcagaaaaattgttagtgcaattaatatgtatg 2031265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 24962476 - 24962442
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  24962476 ttttttcacatttcttaagaaaagttgttagtgta 24962442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 43980694 - 43980660
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  43980694 ttttttcacatttcttaagaaaagttgttagtgta 43980660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 3113676 - 3113600
Alignment:
Q  127 tccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||| | ||||||||  || ||| ||||||| |||||||||||| ||||||| | |||||||| |||||||    
T  3113676 tccctctgtccttatatgtaagtctcttttacattttt-cacatttcttaaaaaaaattatcagtgtaattaatatgt 3113600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 22594327 - 22594360
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  22594327 gttcttttggtcccttaagtatttatttggtatc 22594360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 27560 - 27600
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaat 200  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  27560 ttttttcttatttcttaagaaaaattgttagtgttatgaat 27600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 2562841 - 2562805
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  2562841 ttttttcacatttcttaagaaaaactgtcagtgtaat 2562805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 22590370 - 22590402
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtg 192  Q
    ||||||||||||||||||||||| |||||||||    
T  22590370 ttttttcacatttcttaagaaaatttgttagtg 22590402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 36309724 - 36309688
Alignment:
Q  141 tatgtaagcatcatttgcattttttcacatttcttaa 177  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  36309724 tatgtaaacatcatttgcatcttttcacatttcttaa 36309688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 40790784 - 40790820
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  40790784 ttttttcacatttcttaagaaaagttgtcagtgtaat 40790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 8984803 - 8984734
Alignment:
Q  126 ctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||| | ||||||||| || ||||||||||| ||||||| ||||| |||||||||||||||||    
T  8984803 ctccctctgtccctatatgtaagcctcctttgcattttt-cacattttttaaggaaaattgttagtgtaat 8984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 20564739 - 20564804
Alignment:
Q  129 cctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaa 195  Q
    ||||||||| |||||||||||||| |||||| |||||||||||| ||||||||| ||| ||||||||    
T  20564739 cctctgtccttgtatgtaagcatcttttgca-tttttcacatttgttaagaaaagttgatagtgtaa 20564804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 30898704 - 30898636
Alignment:
Q  127 tccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||| |||| ||||||||| |  | ||||| |||||||||||||||||||||||||||| ||||||||    
T  30898704 tccctccgtccctgtatgtaaactccttttgc-ttttttcacatttcttaagaaaaattgtcagtgtaat 30898636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 15179404 - 15179440
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||||||| ||||||||    
T  15179404 ttttttcacatttcttaagaaaaattgtcagtgtaat 15179440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 38680469 - 38680505
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38680469 ttttttcacatttcttaagaaaagttgttagtgtaat 38680505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 13723605 - 13723555
Alignment:
Q  141 tatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtg 192  Q
    |||||||||| | ||||||||||| ||||||||||||||||| |||||||||    
T  13723605 tatgtaagcaccctttgcattttt-cacatttcttaagaaaagttgttagtg 13723555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 15512890 - 15512856
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  15512890 ttttttcacatttcttaagaaaagttgttagtgta 15512856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 28949073 - 28949039
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  28949073 ttttttcacatttcttaagaaaagttgttagtgta 28949039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 47643537 - 47643583
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgtatg 207  Q
    |||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  47643537 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtatg 47643583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 47754757 - 47754719
Alignment:
Q  154 tttgcattttttcacatttcttaagaaaaattgttagtg 192  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  47754757 tttgcatttttttacatttcttaaaaaaaattgttagtg 47754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 16659953 - 16659920
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  16659953 gttcttttggtcccttaagtatttatttggtatc 16659920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 10842323 - 10842367
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||||||||||||| |||||| || ||| |||||||    
T  10842323 ttttttcacatttcttaagaaaagttgttaatgcaattaatatgt 10842367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 32047436 - 32047472
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  32047436 ttttttcacatttcttaagaaaagttgtcagtgtaat 32047472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 52141286 - 52141250
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  52141286 ttttttcacattttttaagaaaaattattagtgtaat 52141250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 11388115 - 11388151
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  11388115 ttttttcacatttcttaagaaaaattgttagtgtaat 11388151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 46493873 - 46493788
Alignment:
Q  19 aaacatgacgaaggataagatgatcctcatgtcgagcaagagcgtttatcatagaagaattatatgagaatataatattaactgaa 104  Q
    |||||||| |||||| | || |||||||||||||||||||||  ||||||||| |||||| || ||  || ||| |||||||||||    
T  46493873 aaacatgatgaaggacatgacgatcctcatgtcgagcaagagtatttatcatataagaatgatttggtaaaatactattaactgaa 46493788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 50363021 - 50363065
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||    
T  50363021 ttttttcacattttttaagaaaaattgtcagtgtaattaatatgt 50363065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 52325634 - 52325579
Alignment:
Q  140 gtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||   ||||||||||| |||||||||||||||||| ||||||||||||    
T  52325634 gtatgtaagcactctttgcattttt-cacatttcttaagaaaaaatgttagtgtaat 52325579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 20945411 - 20945376
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||| |||||||||||||    
T  20945411 tttttcacatttcttaagaaaagttgttagtgtaat 20945376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 26043014 - 26043057
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  26043014 ttttttacatttcttaagaaaaattgtcagtgtaattaatatgt 26043057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 51263077 - 51263112
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||| ||||||||||||||||||    
T  51263077 tttttcacatttcttaaaaaaaattgttagtgtaat 51263112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 25750488 - 25750557
Alignment:
Q  126 ctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||| |||||||||||  | ||||| |||||| |||||||||||||||  |||||| ||||||    
T  25750488 ctccctctgtccctgtatgtaagctccctttgcttttttt-acatttcttaagaaaggttgttaatgtaat 25750557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 26121301 - 26121362
Alignment:
Q  134 gtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||    |||||||||||| |||||||||||||||| |||| ||||||||    
T  26121301 gtccatgtatgtaagctctttttgcatttttt-acatttcttaagaaaagttgtcagtgtaat 26121362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 37729141 - 37729112
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgtta 189  Q
    ||||||||||||||||||||||||||||||    
T  37729141 ttttttcacatttcttaagaaaaattgtta 37729112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 52255580 - 52255547
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  52255580 gttcttttggtcccttaagtatttatttggtatc 52255547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 14646001 - 14645965
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  14646001 ttttttcacattttttaagaaaagttgttagtgtaat 14645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 23157093 - 23157125
Alignment:
Q  164 ttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||| ||||||||    
T  23157093 ttcacatttcttaagaaaaattgtcagtgtaat 23157125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31531537 - 31531501
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  31531537 ttttttcacatttcttaagaaaagttgtcagtgtaat 31531501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 42010862 - 42010898
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  42010862 ttttttcacatttcttaagaaaatttgttaatgtaat 42010898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 46048516 - 46048552
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  46048516 ttttttcacatttcttaagaaaagttgtcagtgtaat 46048552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 46435842 - 46435806
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  46435842 ttttttcacatttcttaagaaaagttgtcagtgtaat 46435806  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 99957 - 99895
Alignment:
Q  129 cctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtg 192  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||| ||||||||| |||||||||    
T  99957 cctctgtccttgtatgtaagcatcttttgcat-ttttcatatttgttaagaaaagttgttagtg 99895  T

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Target: scaffold1091 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 2056 - 1987
Alignment:
Q  126 ctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||| ||||||||| |  | ||||| |||||||||||||||||||| || |||||||||||||    
T  2056 ctccctctgtccctgtatgtaacctccctttgc-ttttttcacatttcttaagataagttgttagtgtaat 1987  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 49126 - 49175
Alignment:
Q  154 tttgcattttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  49126 tttgcatttttt-acatttcttaagaaaaattgttaatgtaattaatatgt 49175  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 20361978 - 20362012
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    |||||||||||||||||||||||||||||||||||    
T  20361978 ttttttcacatttcttaagaaaaattgttagtgta 20362012  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 7278723 - 7278679
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||    
T  7278723 ttttttcacatttgttaagaaaaattgtcagtgtaattaatatgt 7278679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 17663619 - 17663655
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17663619 ttttttcacatttcttaagaaaagttgttagtgtaat 17663655  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 27297572 - 27297608
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27297572 ttttttcacatttcttaagaaaaactgttagtgtaat 27297608  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 27749507 - 27749551
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||    
T  27749507 ttttttcacatttcttaagaaaagttgtcagtgtaattaatatgt 27749551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 44421444 - 44421480
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||||||| ||||||||    
T  44421444 ttttttcacatttcttaagaaaaattgtcagtgtaat 44421480  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 13477142 - 13477099
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||    
T  13477142 tttttcacattttttaagaaaaattgttagtgcaattaatatgt 13477099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 44424591 - 44424626
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||| |||||||||||||    
T  44424591 tttttcacatttcttaagaaaagttgttagtgtaat 44424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 2395791 - 2395833
Alignment:
Q  154 tttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||| ||||||| |||||||||||||||| |||||||||||||    
T  2395791 tttgtatttttttacatttcttaagaaaagttgttagtgtaat 2395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 8667600 - 8667677
Alignment:
Q  126 ctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||| ||| |||||| |||| || |||||||||| ||||||||| |||||||| |||| ||| |||| |||||||    
T  8667600 ctccctctctccctgtatgcaagcctcctttgcatttt-tcacatttcctaagaaaagttgtcagtctaattaatatgt 8667677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 43709893 - 43709946
Alignment:
Q  139 tgtatgtaagcatcatttgcattttttcacatttcttaag-aaaaattgttagtg 192  Q
    |||||||||||| | |||||||||| |||||||||||||| ||||||||||||||    
T  43709893 tgtatgtaagcaccctttgcatttt-tcacatttcttaagcaaaaattgttagtg 43709946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 26512046 - 26512102
Alignment:
Q  139 tgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||  | ||||| |||||||||||||||||| ||||||||||||| ||||    
T  26512046 tgtatgtaagctccttttgc-ttttttcacatttcttaaaaaaaattgttagtataat 26512102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 28265061 - 28265025
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  28265061 ttttttcacatttcttaagaaaagttgtcagtgtaat 28265025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 214613 - 214649
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  214613 ttttttcacatttcttaagaaaagttgttagtgtaat 214649  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 3888091 - 3888024
Alignment:
Q  121 atatgctccctctgtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgtta 189  Q
    |||| ||||||| |||| |||||||||||| | |||||| |||| ||||||||||||||||| ||||||    
T  3888091 atatactccctccgtccttgtatgtaagcaccttttgcaatttt-cacatttcttaagaaaagttgtta 3888024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 15587254 - 15587322
Alignment:
Q  20 aacatgacgaaggataagatgatcctcatgtcgagcaagagcgtttatcatagaagaattatatgagaa 88  Q
    ||||||| |||||| | ||  |||| |||||||||||||||| || ||||||||||||| |||||||||    
T  15587254 aacatgatgaaggacaggaaaatccacatgtcgagcaagagcattaatcatagaagaatgatatgagaa 15587322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 22410954 - 22410918
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  22410954 ttttttcacatttcttaagaaaagttgttagtgtaat 22410918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31946023 - 31945987
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31946023 ttttttcacatttcttaagaaaatttgttagtgtaat 31945987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 5084650 - 5084611
Alignment:
Q  162 ttttcacatttcttaagaaaaattgttagtgtaatgaata 201  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  5084650 ttttcacatttcttaagaaaagttgttagtgtaattaata 5084611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 19838926 - 19838960
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  19838926 ttttttcacatttcttaagaaaagttgttagtgta 19838960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 11081892 - 11081933
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatat 202  Q
    |||||||||| ||||||||||| ||||||||||||| |||||    
T  11081892 tttttcacatatcttaagaaaagttgttagtgtaattaatat 11081933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 31536008 - 31536049
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatat 202  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  31536008 ttttttacatttcttaagaaaagttgttagtgtaattaatat 31536049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 3729384 - 3729420
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||| |||||||||||||||||||||| |||||||    
T  3729384 tttttttacatttcttaagaaaaattgttggtgtaat 3729420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 29866185 - 29866228
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaatgaatatgt 204  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||    
T  29866185 tttttcacatttcttaagaaaagttgttagtgcaattaatatgt 29866228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 38972234 - 38972199
Alignment:
Q  161 tttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||| |||||||||||||    
T  38972234 tttttcacatttcttaagaaaagttgttagtgtaat 38972199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 4378112 - 4378173
Alignment:
Q  134 gtccatgtatgtaagcatcatttgcattttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||   | ||||| |||||||||||||||||| |||| |||||||||||||    
T  4378112 gtccatgtatgtaagttccttttgc-ttttttcacatttcttaaaaaaagttgttagtgtaat 4378173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 10656587 - 10656633
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaatgaatatgtat 206  Q
    |||||||||||||||||||||||||||||| || ||| ||| |||||    
T  10656587 ttttttcacatttcttaagaaaaattgttaatgcaattaatgtgtat 10656633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 27642497 - 27642531
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  27642497 ttttttcacatttcttaagaaaagttgttagtgta 27642531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 39690595 - 39690561
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgta 194  Q
    ||||||||||||||||||||||| |||||||||||    
T  39690595 ttttttcacatttcttaagaaaagttgttagtgta 39690561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 28905506 - 28905473
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  28905506 gttcttttggtcccttaagtatttatttggtatc 28905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 28941901 - 28941868
Alignment:
Q  221 gttcttttggtcccataagtatttatttggtatc 254  Q
    |||||||||||||| |||||||||||||||||||    
T  28941901 gttcttttggtcccttaagtatttatttggtatc 28941868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 3559136 - 3559108
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgtt 188  Q
    |||||||||||||||||||||||||||||    
T  3559136 ttttttcacatttcttaagaaaaattgtt 3559108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 4857607 - 4857571
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||| |||| |||||||||||||    
T  4857607 ttttttcacatttcttaataaaagttgttagtgtaat 4857571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 18729583 - 18729619
Alignment:
Q  160 ttttttcacatttcttaagaaaaattgttagtgtaat 196  Q
    |||||||||||||||||||||||||| || |||||||    
T  18729583 ttttttcacatttcttaagaaaaattatttgtgtaat 18729619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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