View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10483_high_2 (Length: 447)
Name: NF10483_high_2
Description: NF10483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10483_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 30656763 - 30656347
Alignment:
| Q |
15 |
acaatccatccattcctgagaagtaaccatggcctgtaaattgtgtttaagaacaaccattcgtttcaacgtggtaaagtctgtcgtgaagcgagagaaa |
114 |
Q |
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| T |
30656763 |
acaatccatccattcctgagaagtaaccatggcctgtaaattgtgtttaagaacaaccattcgtttcaacgtggtaaagtctgtcgtgaagcgagagaaa |
30656664 |
T |
|
| Q |
115 |
gagggatccacaatatcattccccaaagtataccttttaaccatattcaaaattgcactgtaattgtagacaaatcttgttatagatttagcctgttcaa |
214 |
Q |
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| T |
30656663 |
gagggatccacaatatcattccccaaagtataccttttaaccatattcaaaattgcactgtaattgtagacaaatcttgttatagatttagcctgttcaa |
30656564 |
T |
|
| Q |
215 |
taactgtactaatccactcaatatttccaaaatcttcaagtatcaaatcaatgcaatgagccgcagaagggctccaataaaggctagggtaagtctcagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30656563 |
taactgtactaatccactcaatatttccaaaatcttcaagtatcaaatcaatgcaatgagccgcagaagggctccaataaaggctagggtaagtctcagt |
30656464 |
T |
|
| Q |
315 |
cagcattctcccagcatcagcataccgtttctcagctgatgtaatcacttgcacaacttgcccaactccaacttcttctactacttctttcatcaacccg |
414 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30656463 |
cagcattctcccagcatcagcataccatttctcagctgatgtaatcacttgcacaacttgcccaactccaacttcttctactacttctttcatcaacccg |
30656364 |
T |
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| Q |
415 |
tataaaaaatcttctga |
431 |
Q |
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| T |
30656363 |
tataaaaaatcttctga |
30656347 |
T |
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Back To:
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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 24110030 - 24110105
Alignment:
| Q |
200 |
atttagcctgttcaataactgtactaatccactcaatatttccaaaatcttcaagtatcaaatcaatgcaatgagc |
275 |
Q |
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||||||| |||| ||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
24110030 |
atttagcttgtttaattactgtactaatccagtcaaggtttccaaaatcttcaagtatccaatcaatgcaatgagc |
24110105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 4262708 - 4262672
Alignment:
| Q |
352 |
gatgtaatcacttgcacaacttgcccaactccaactt |
388 |
Q |
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| T |
4262708 |
gatgtgatcacttgcacaacttgcccaactccaactt |
4262672 |
T |
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