View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10483_low_2 (Length: 483)
Name: NF10483_low_2
Description: NF10483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10483_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 3632963 - 3633433
Alignment:
| Q |
1 |
attcgtagcatcaccaaaaattaaattagacccaatgattattcatttattctgctagcatggctgcaaatttggtgtgctgcatgcgtatcagccttat |
100 |
Q |
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| T |
3632963 |
attcgtagcaccaccaaaaattaaattagacccaatgattattcatttattctgctagcatggctgcaaatttggtgtgctgcatgcgtatcagccttat |
3633062 |
T |
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| Q |
101 |
tgtcacatggcctagtaaaaattagagtatgtttttgggtaatggatg-cattaatggtcgaacgtgatggagtattgttttctagagtggttgattgat |
199 |
Q |
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| T |
3633063 |
tgtcacatggcctagtaaaaattagagtatgtttttgggtaatggatggcattaatggtggaacgtgatggagtattgttttctagagtggttgattaat |
3633162 |
T |
|
| Q |
200 |
gaatcaaacttgtggcatgatgatcatgaggttcaacgatggagtgttagcctctataattagaacacttcaacagctctaaattatgacagtttcctac |
299 |
Q |
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| T |
3633163 |
gaatcaaacttgtggcatgatgatcatgaggttcaacgatggagtgttagcctctataattagaacacttcaacagctataaattatgacagtttcctac |
3633262 |
T |
|
| Q |
300 |
tagacttcatagttgtttttggtactacagatatttatctctatgtatgtgatcaaatgattattcaccaattcatattctttcatacggttggacattt |
399 |
Q |
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| T |
3633263 |
tagacttcatagttgtttttggtactacagatatttatctctatgtatgtgatcaaatgattattcaccaattcatattctttcatacggttggacattt |
3633362 |
T |
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| Q |
400 |
gattcttcacaaaacttataatagaaaaaccaatttcaattattattgttgtcatgtgcaaaatcaaaatt |
470 |
Q |
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| T |
3633363 |
gattcttcacaaaacttataatagaaaaaccaatttcaattattattgttgtcatgtgcaaaatcaaaatt |
3633433 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 5700829 - 5700793
Alignment:
| Q |
383 |
catacggttggacatttgattcttcacaaaacttata |
419 |
Q |
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| T |
5700829 |
catacggttgcgcatttgattcttcacaaaacttata |
5700793 |
T |
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