View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10483_low_4 (Length: 391)

Name: NF10483_low_4
Description: NF10483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10483_low_4
NF10483_low_4
[»] chr1 (6 HSPs)
chr1 (60-377)||(2621659-2621979)
chr1 (12-48)||(27907781-27907817)
chr1 (12-48)||(48843454-48843490)
chr1 (12-48)||(48915143-48915179)
chr1 (12-48)||(48914951-48914987)
chr1 (12-48)||(48915342-48915378)
[»] chr8 (5 HSPs)
chr8 (12-48)||(4834936-4834972)
chr8 (12-48)||(16499786-16499822)
chr8 (12-46)||(16467677-16467711)
chr8 (12-48)||(16508711-16508747)
chr8 (12-48)||(33938569-33938605)
[»] chr7 (4 HSPs)
chr7 (12-48)||(34328183-34328219)
chr7 (12-48)||(46425294-46425330)
chr7 (12-48)||(2628402-2628438)
chr7 (12-48)||(18867904-18867940)
[»] chr6 (2 HSPs)
chr6 (12-48)||(9928339-9928375)
chr6 (12-48)||(22469777-22469813)
[»] chr4 (1 HSPs)
chr4 (12-48)||(52673164-52673200)
[»] chr3 (3 HSPs)
chr3 (12-48)||(4037219-4037255)
chr3 (12-48)||(34272419-34272455)
chr3 (12-48)||(39350759-39350795)
[»] chr5 (1 HSPs)
chr5 (12-48)||(2651702-2651738)
[»] chr2 (3 HSPs)
chr2 (12-48)||(15141958-15141994)
chr2 (12-48)||(19037023-19037059)
chr2 (12-48)||(41069639-41069675)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 60 - 377
Target Start/End: Complemental strand, 2621979 - 2621659
Alignment:
Q  60 tacataccctacatcatagttggtgaacgaacggtaaatatcatactacatgtctgtcaaggtacaaacaatatcaaacatgagcctagaatgatccttg 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621979 tacataccctacatcatagttggtgaaagaacggtaaatatcatactacatgtctgtcaaggtacaaacaatatcaaacatgagcctagaatgatccttg 2621880  T
Q  160 cactcaactcaacattctactaagatatttaataaaacacaccgtccatgcaccaatcactaattagcatccgatgaaatataacttttgatgatttgaa 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621879 cactcaactcaacattctactaagatatttaataaaacacaccgtccatgcaccaatcactaattagcatccgatgaaatataacttttgatgatttgaa 2621780  T
Q  260 agttcatgtctgtcaaaacatgtaacatatctagtaggac---accatgcttgttagcactatccacctgaaatatcaattttacaaaaatacggtcctt 356  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2621779 agttcatgtctgtcaaaacatgtaacatatctagtaggacaccaccatgcttgttaacactatccacctgaaatatcaattttacaaaaatatggtcctt 2621680  T
Q  357 atattaattggtacatttttt 377  Q
    |||||||| ||||||||||||    
T  2621679 atattaataggtacatttttt 2621659  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 27907781 - 27907817
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27907781 atgaacctatgtcaccaatgacaccaaaaaactatgg 27907817  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 48843454 - 48843490
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  48843454 atgaacctatgtcaccaatggcaccaaaaaactatgg 48843490  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 48915179 - 48915143
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48915179 atgaacctatgtcaccaatgtcacaaaaaaactatgg 48915143  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 48914987 - 48914951
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  48914987 atgaacttatgtcaccaatgtcacaaaaaaactatgg 48914951  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 48915378 - 48915342
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  48915378 atgaacttatgtcaccaatgtcacaaaaaaactatgg 48915342  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 4834972 - 4834936
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4834972 atgaacctatgtcaccaatatcaccaaaaaactatgg 4834936  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 16499822 - 16499786
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16499822 atgaacctatatcaccaatgtcaccaaaaaactatgg 16499786  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 16467677 - 16467711
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactat 46  Q
    |||||||||| ||||||||||||||||||||||||    
T  16467677 atgaacctatatcaccaatgtcaccaaaaaactat 16467711  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 16508747 - 16508711
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||| |||||||||||||||||||| |||||    
T  16508747 atgaacctatatcaccaatgtcaccaaaaaaatatgg 16508711  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 33938605 - 33938569
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  33938605 atgaacctatgtcatcaatggcaccaaaaaactatgg 33938569  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 34328183 - 34328219
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  34328183 atgaacctatgtcaccaatggcaccaaaaaactatgg 34328219  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 46425330 - 46425294
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  46425330 atgaacctatgtcaccaatggcaccaaaaaactatgg 46425294  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 2628438 - 2628402
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  2628438 atgaacttatgtcaccaatggcaccaaaaaactatgg 2628402  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 18867940 - 18867904
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  18867940 atgaacctatgtcaccaatgacacaaaaaaactatgg 18867904  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 9928339 - 9928375
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9928339 atgaacctatgtcaccaatggcaccaaaaaactatgg 9928375  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 22469777 - 22469813
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22469777 atgaacctatgtcaccaatggcaccaaaaaactatgg 22469813  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 52673200 - 52673164
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  52673200 atgaacctatgtcaccaatgacaccaaaaaactatgg 52673164  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 4037219 - 4037255
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4037219 atgaacctatgtcaccaatggcaccaaaaaactatgg 4037255  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 34272455 - 34272419
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||  ||||||||||||||||    
T  34272455 atgaacctatgtcaccaataacaccaaaaaactatgg 34272419  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 39350795 - 39350759
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  39350795 atgaacctatggcaccaatggcaccaaaaaactatgg 39350759  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 2651702 - 2651738
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  2651702 atgaacttatgtcaccaatggcaccaaaaaactatgg 2651738  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 15141958 - 15141994
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| || |||||||||||||    
T  15141958 atgaacctatgtcaccaatgacatcaaaaaactatgg 15141994  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 19037059 - 19037023
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  19037059 atgaacctatgtcaccaatggcactaaaaaactatgg 19037023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 41069675 - 41069639
Alignment:
Q  12 atgaacctatgtcaccaatgtcaccaaaaaactatgg 48  Q
    |||||||||||||||||||| |||||||||| |||||    
T  41069675 atgaacctatgtcaccaatggcaccaaaaaattatgg 41069639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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