View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10483_low_6 (Length: 288)
Name: NF10483_low_6
Description: NF10483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10483_low_6 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0291 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 4922 - 4651
Alignment:
| Q |
1 |
ttacaagctaaaagacacaaagccagagctaggagaaaaatggccacatggaggacaacgaggcggaactggttggctatacagcgaaagagcaacgagc |
100 |
Q |
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| T |
4922 |
ttacaagctaaaagacacaaagccagagctaggagaaaaatggccacatggaggacaacgaggcggaactggttggctatacagcgaaagagcaacgagc |
4823 |
T |
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| Q |
101 |
acttacgaccttgtggaacagatgttctacctctatgttcgtgttgtcaaagccaaagaattgccaccaaatccagtcacaggaaatgtagatccttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822 |
acttacgaccttgtggaacagatgttctacctctatgttcgtgttgtcaaagccaaagaattgccaccaaatccagtcacaggaaatgtagatccttatg |
4723 |
T |
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| Q |
201 |
ttgaagtgaaagttggcaactacaaaggaaaaacaagacactttgagaagaaaacaaaccccgaatggaagc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4722 |
ttgaagtgaaagttggcaactacaaaggaaaaacaagacactttgagaagaaaacaaaccccgaatggaagc |
4651 |
T |
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