View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10483_low_7 (Length: 267)

Name: NF10483_low_7
Description: NF10483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10483_low_7
NF10483_low_7
[»] chr1 (3 HSPs)
chr1 (18-254)||(46160831-46161064)
chr1 (20-254)||(46167347-46167578)
chr1 (27-251)||(46182598-46182819)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 46161064 - 46160831
Alignment:
Q  18 aattcatccatatagtatggtaaatgtatgccatttagcgaggccattgtttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagt 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46161064 aattcatccatatagtatggtaaatgtatgccatttagtgaggccattatttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagt 46160965  T
Q  118 gagcatggttctatatttcaccaatctannnnnnnggtctgctagtttgaagctgtgactacctaacagaactgcagaaaatatcttcatctgtctgtat 217  Q
    |||| |||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46160964 gagcgtggttctatatttcaccaatcta---ttttggtctgctagtttgaagttgtgactacctaacagaactgcagaaaatatcttcatctgtctgtat 46160868  T
Q  218 gcaaactccttgccaaggcaaattcttggacccgcct 254  Q
     |||||||||||||||| |||||||||||||||||||    
T  46160867 acaaactccttgccaagacaaattcttggacccgcct 46160831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 46167578 - 46167347
Alignment:
Q  20 ttcatccatatagtatggtaaatgtatgccatttagcgaggccattgtttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagtga 119  Q
    |||||| |||||||||  ||||||| |||| |||||  |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||| |    
T  46167578 ttcatcaatatagtattctaaatgtgtgccctttagtaaggccattatttatttctgtgaaaagcattcacatgcagcccatcatcaatttgtagagtaa 46167479  T
Q  120 gcatggttctatatttcaccaatctannnnnnnggtctgctagtttgaagctgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatgc 219  Q
    ||  ||||||||||||||||||| ||       |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46167478 gcgaggttctatatttcaccaatttatttt---ggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatcttcatctgtctgtatgc 46167382  T
Q  220 aaactccttgccaaggcaaattcttggacccgcct 254  Q
    |||||||||||||||||||||||||||||||||||    
T  46167381 aaactccttgccaaggcaaattcttggacccgcct 46167347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 46182819 - 46182598
Alignment:
Q  27 atatagtatggtaaatgtatgccatttagcgaggccattgtttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagtgagcatggt 126  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  46182819 atatagtatggtaaatgtgtgccatttagtaaggccattatttatttctgtgaaaagtattcacatgcagcccatcatcaatttgtagagtgagcatggt 46182720  T
Q  127 tctatatttcaccaatctannnnnnnggtctgctagtttgaagctgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactcc 226  Q
    |||||||||||||||| ||       |||||||||||||  || |||| |||||||| |||||||||||||||||||| || |||||||||||||||| |    
T  46182719 tctatatttcaccaattta---ttttggtctgctagtttatagttgtggctacctaatagaactgcagaaaatatctttatatgtctgtatgcaaacttc 46182623  T
Q  227 ttgccaaggcaaattcttggacccg 251  Q
    ||||||||||||| |||||||||||    
T  46182622 ttgccaaggcaaactcttggacccg 46182598  T

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