View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10484_1 (Length: 416)
Name: NF10484_1
Description: NF10484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10484_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 66 - 416
Target Start/End: Complemental strand, 2411125 - 2410788
Alignment:
| Q |
66 |
catttggtctcgggtcgagaccaacctcaagcccaatttcaacctcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttactaccagc |
165 |
Q |
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| T |
2411125 |
catttggtctcgggtcgagtccaacctcaagcccaatttgaac-tcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttac---cagc |
2411030 |
T |
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| Q |
166 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttacaaacaccaaaacaaaaacaacactgtgttac |
265 |
Q |
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| T |
2411029 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac-aacaccaaaacaaaaacaacactgtgttac |
2410931 |
T |
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| Q |
266 |
tgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
365 |
Q |
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|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410930 |
tgtaacgc--------tcttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
2410839 |
T |
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| Q |
366 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc |
416 |
Q |
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| T |
2410838 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc |
2410788 |
T |
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