View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10484_high_1 (Length: 244)

Name: NF10484_high_1
Description: NF10484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10484_high_1
NF10484_high_1
[»] chr4 (6 HSPs)
chr4 (1-224)||(20355058-20355281)
chr4 (127-177)||(27360262-27360312)
chr4 (127-187)||(51700319-51700378)
chr4 (145-186)||(5351016-5351057)
chr4 (1-53)||(20346720-20346772)
chr4 (127-183)||(52311278-52311334)
[»] chr7 (3 HSPs)
chr7 (63-183)||(7578536-7578662)
chr7 (63-175)||(35339023-35339141)
chr7 (141-185)||(48143675-48143718)
[»] chr5 (7 HSPs)
chr5 (61-186)||(35105028-35105159)
chr5 (61-186)||(29948458-29948589)
chr5 (127-183)||(16633321-16633377)
chr5 (135-175)||(24228338-24228377)
chr5 (135-176)||(24213344-24213384)
chr5 (141-185)||(25214463-25214506)
chr5 (141-185)||(25278613-25278656)
[»] chr2 (5 HSPs)
chr2 (127-183)||(21289652-21289707)
chr2 (127-177)||(21294956-21295005)
chr2 (135-186)||(45276428-45276478)
chr2 (191-224)||(7384798-7384831)
chr2 (127-176)||(19912349-19912397)
[»] chr1 (4 HSPs)
chr1 (127-183)||(27417452-27417508)
chr1 (127-183)||(11444079-11444134)
chr1 (127-174)||(18640556-18640602)
chr1 (127-187)||(28201688-28201747)
[»] chr8 (4 HSPs)
chr8 (127-176)||(44711349-44711398)
chr8 (127-170)||(12145704-12145747)
chr8 (127-223)||(28621807-28621909)
chr8 (141-185)||(28350612-28350655)
[»] chr3 (4 HSPs)
chr3 (134-179)||(21587185-21587229)
chr3 (127-176)||(44126784-44126832)
chr3 (137-185)||(13100788-13100835)
chr3 (127-176)||(44122054-44122102)
[»] chr6 (1 HSPs)
chr6 (135-176)||(19441194-19441234)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20355281 - 20355058
Alignment:
1 atctaccaattgttttgagaattaatataatttgtttgaccacttttagtgagaacatttacttagtggatgtctatccttagttttcctccttccaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||    
20355281 atctaccaattgttttgagaattaatataatttgtttgaccacttttagtaagaacatttacttagcagatgtctatccttagttttccaccttccaata 20355182  T
101 gcttctataagtgaatggatgattagttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaacatttgagaagca 200  Q
     ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
20355181 acttctataagtgaatagatgattagttaattactttgatcattcagttgttcatattgtatcctataaataggactcatattttaacatttgagaagca 20355082  T
201 atacaatatactcttttattctct 224  Q
    ||||||||||||||||||||||||    
20355081 atacaatatactcttttattctct 20355058  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 27360262 - 27360312
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggact 177  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
27360262 ttaattactttgatcattcacttgttcatattgtatcctataaataggact 27360312  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 51700378 - 51700319
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa 187  Q
    ||||||| ||||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||    
51700378 ttaattattttgatcattcacatgctcat-ttgtatcatataaagaggactcatatcttaa 51700319  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 5351016 - 5351057
Alignment:
145 cacttgctcatattgtatcctataaataggactcatatttta 186  Q
    ||||| ||||| |||| |||||||||||||||||||||||||    
5351016 cacttactcattttgtgtcctataaataggactcatatttta 5351057  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20346772 - 20346720
Alignment:
1 atctaccaattgttttgagaattaatataatttgtttgaccacttttagtgag 53  Q
    |||||| ||||  |||||||| ||||||||||  |||||||||||||||||||    
20346772 atctacgaatttatttgagaactaatataattcatttgaccacttttagtgag 20346720  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 52311334 - 52311278
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 183  Q
    |||||| ||||||||| ||||||  |||| |||| |||||||||||||| |||||||    
52311334 ttaatttctttgatcactcacttagtcatcttgtgtcctataaataggattcatatt 52311278  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 7578536 - 7578662
Alignment:
63 ttagtggatgtctatccttagttttcctccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcacttgctcata 156  Q
    |||||||||||| ||||||||| |||| |||||| |||  | | ||||||||||||||| | |||      ||||||||||||||||||||||||| |||    
7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
157 ttgtatcctataaataggactcatatt 183  Q
    |||||||||||||||||||||||||||    
7578636 ttgtatcctataaataggactcatatt 7578662  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
63 ttagtggatgtctatccttagttttcctccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcacttgctcata 156  Q
    |||||||||||| ||| ||||| |||| |||||| ||| || | ||||||||||||||| ||| |      |||||||||||||  ||||| ||||||||    
35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
157 ttgtatcctataaatagga 175  Q
    |||||||||||||||||||    
35339041 ttgtatcctataaatagga 35339023  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 48143675 - 48143718
Alignment:
141 cattcacttgctcatattgtatcctataaataggactcatatttt 185  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
48143675 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 48143718  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 35105028 - 35105159
Alignment:
61 acttagtggatgtctatccttagttttcctccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcac-ttgctc 153  Q
    |||||||||||||| ||||||||| || | |||| ||||| || | ||||||||||||||| |||||      |||||||||||||||||||| ||||||    
35105028 acttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactttgctc 35105127  T
154 atattgtatcctataaataggactcatatttta 186  Q
    ||| ||||| |||||||||||||||||||||||    
35105128 atactgtat-ctataaataggactcatatttta 35105159  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 29948589 - 29948458
Alignment:
61 acttagtggatgtctatccttagttttcctccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcacttgctca 154  Q
    |||||||||||||| ||||||| | |||| | |||| |||  | ||||||||||| ||||| ||| |      |||||||||||||||||||||||||||    
29948589 acttagtggatgtccatccttaatcttccacattcctataagtcctataagtgaagggatggttactggtccttaattactttgatcattcacttgctca 29948490  T
155 tattgtatcctataaataggactcatatttta 186  Q
     |||||||||||||||||  |||| |||||||    
29948489 gattgtatcctataaataatactcgtatttta 29948458  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 16633377 - 16633321
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 183  Q
    ||||||||||||||||||||||| ||||  |||| ||||||||||||| ||||||||    
16633377 ttaattactttgatcattcacttactcaacttgtgtcctataaatagggctcatatt 16633321  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 24228377 - 24228338
Alignment:
135 tttgatcattcacttgctcatattgtatcctataaatagga 175  Q
    |||||||||||||||||||| ||||||||||||||||||||    
24228377 tttgatcattcacttgctca-attgtatcctataaatagga 24228338  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 24213384 - 24213344
Alignment:
135 tttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
24213384 tttgatcattcacttgctcat-ttgtgtcctataaataggac 24213344  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 25214506 - 25214463
Alignment:
141 cattcacttgctcatattgtatcctataaataggactcatatttt 185  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
25214506 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 25214463  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 25278656 - 25278613
Alignment:
141 cattcacttgctcatattgtatcctataaataggactcatatttt 185  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
25278656 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 25278613  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 21289707 - 21289652
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 183  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
21289707 ttaattactttgatcattcacttgctcat-ttgtgtcctataaataggacttatatt 21289652  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 21295005 - 21294956
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggact 177  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
21295005 ttaatgactttgatcattcacttgctcat-ttgtatcctataaataggact 21294956  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 45276428 - 45276478
Alignment:
135 tttgatcattcacttgctcatattgtatcctataaataggactcatatttta 186  Q
    ||||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
45276428 tttgaccattcacttactcat-ttgtgtcctataaataggactcatatttta 45276478  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 7384831 - 7384798
Alignment:
191 ttgagaagcaatacaatatactcttttattctct 224  Q
    ||||||||||||||||||||||||| ||||||||    
7384831 ttgagaagcaatacaatatactcttatattctct 7384798  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 19912349 - 19912397
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    |||||| ||||||||| |||||||||||| |||| |||||||||||||||    
19912349 ttaattgctttgatcactcacttgctcat-ttgtgtcctataaataggac 19912397  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27417508 - 27417452
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 183  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||    
27417508 ttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtatt 27417452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 11444134 - 11444079
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 183  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
11444134 ttaatgactttgatcattcacttgctcat-ttgtgtcctataaataggacttatatt 11444079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 18640602 - 18640556
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaatagg 174  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||    
18640602 ttaattgctttgatcattcacttgctcat-ttgtgtcctataaatagg 18640556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28201747 - 28201688
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa 187  Q
    |||||| ||||||| ||||||||| |||| || | ||||||||||| ||||||||||||||    
28201747 ttaattgctttgataattcacttgttcat-ttatgtcctataaatatgactcatattttaa 28201688  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 44711398 - 44711349
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||| ||||    
44711398 ttaattattttgatcattcatttgttcatattgtatcctataaatcggac 44711349  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 12145747 - 12145704
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaa 170  Q
    |||||||||||||||| |||||||||||| |||| |||||||||    
12145747 ttaattactttgatcactcacttgctcattttgtgtcctataaa 12145704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 28621807 - 28621909
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa----------catttgagaagcaatacaatatactcttt 216  Q
    ||||||||||| ||||||||||||||||||||||| | |||| |    |||||||||||||          ||||||||||||||| ||||||||||| |    
28621807 ttaattactttaatcattcacttgctcatattgtaacttataga----actcatattttaatgtaaagacacatttgagaagcaatgcaatatactctat 28621902  T
217 tattctc 223  Q
    |||||||    
28621903 tattctc 28621909  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 28350655 - 28350612
Alignment:
141 cattcacttgctcatattgtatcctataaataggactcatatttt 185  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
28350655 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 28350612  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 21587229 - 21587185
Alignment:
134 ctttgatcattcacttgctcatattgtatcctataaataggactca 179  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
21587229 ctttgatcattcacttgctcat-ttgtgtcctataaataggactca 21587185  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 44126832 - 44126784
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
44126832 ttaatgactttgatcattcacttgctcat-ttgtgtcctataaataggac 44126784  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 13100788 - 13100835
Alignment:
137 tgatcattcacttgctcatattgtatcctataaataggactcatatttt 185  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||    
13100788 tgatcattcacttgcttat-ttgtatcctataaataggactcatgtttt 13100835  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 44122102 - 44122054
Alignment:
127 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    ||||| ||||||||||||||| ||||||| |||| |||||||||||||||    
44122102 ttaatgactttgatcattcacctgctcat-ttgtgtcctataaataggac 44122054  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 19441234 - 19441194
Alignment:
135 tttgatcattcacttgctcatattgtatcctataaataggac 176  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
19441234 tttgatcattcacttgctcat-ttgtgtcctataaataggac 19441194  T

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