View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_high_2 (Length: 416)
Name: NF10485_high_2
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_high_2 |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 1301671 - 1301301
Alignment:
| Q |
18 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtggcagttagcatgcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1301671 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtggcagttagcatgcaa |
1301576 |
T |
|
| Q |
118 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301575 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
1301476 |
T |
|
| Q |
218 |
aatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaacctagag |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301475 |
gatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaacctagag |
1301376 |
T |
|
| Q |
318 |
tttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||| |
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| T |
1301375 |
tttacaacggtagttgtttgtttcgagttttttatgtggtgtgttttatcagcactgtgatgcacttgtataaga |
1301301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 1291210 - 1291545
Alignment:
| Q |
18 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtggcagttagcatgcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1291210 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtggcagttagcatgcaa |
1291305 |
T |
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| Q |
118 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1291306 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
1291405 |
T |
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| Q |
218 |
aatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagtt-----gcctatgtgctcagcataagtaattgtagcatctaatagaacc |
312 |
Q |
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| T |
1291406 |
tatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctagcctatgtgctcatcataagtaattggagcatctaattgaacc |
1291505 |
T |
|
| Q |
313 |
tagagtttacaacggtagttgtttgtttcgagttttttat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1291506 |
tagagtttacaacggtagttgtttgtttcgagttttttat |
1291545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 26672329 - 26671955
Alignment:
| Q |
18 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtggcagttagcatgcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26672329 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtggcagttagcatgcaa |
26672234 |
T |
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| Q |
118 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672233 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
26672134 |
T |
|
| Q |
218 |
aatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaac----ct |
313 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26672133 |
gatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaacctagct |
26672034 |
T |
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| Q |
314 |
agagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
26672033 |
agagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactgtgatgcacttatataaga |
26671955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 26674857 - 26674483
Alignment:
| Q |
18 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtggcagttagcatgcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26674857 |
tgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtggcagttagcatgcaa |
26674762 |
T |
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| Q |
118 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26674761 |
ggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaa |
26674662 |
T |
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| Q |
218 |
aatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaac----ct |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26674661 |
gatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcataagtaattgtagcatctaatagaacctagct |
26674562 |
T |
|
| Q |
314 |
agagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
26674561 |
agagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactgtgatgcacttatataaga |
26674483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 20872 - 20790
Alignment:
| Q |
205 |
tacctggtttgaaaatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcata |
287 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20872 |
tacctggtttgaagatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatgtgctcagcata |
20790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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