View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_high_3 (Length: 410)
Name: NF10485_high_3
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 40114013 - 40114377
Alignment:
| Q |
17 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatatttcatggcttgtcggatattagatggttcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40114013 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatattttatggcttgtcggatattagatggttcaa |
40114112 |
T |
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| Q |
117 |
ggttctcaggtaatggatgaacagatgcatggtaaagtttctttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcattagcacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40114113 |
ggttctcaggtaatggatgaacagatgcatggtaaagtttctttgttttgaatatgttgttttgggatctagtgaccacatgattgcgatcattagcacc |
40114212 |
T |
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| Q |
217 |
tgcaatggggttaggtagaatcataggtaggtttaaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114213 |
tgcaatggggttaggtagaatcataggtaggtttgaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttga |
40114312 |
T |
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| Q |
317 |
ggatttgcaacagatgtagaggtagtggtggtcgcagtttgtgaagtattagttgtaagtggtgg |
381 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40114313 |
ggatttgcaacagatgtagaggtagtggtggtcacagtttgtgaagtattagttgtaagtggtgg |
40114377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 655132 - 655327
Alignment:
| Q |
17 |
agtgtccatgtgccatttcgaattaaggcatcaaactcctcagaaatagcttgtctccaatgggaatatttcatggcttgtcggatattagatggttcaa |
116 |
Q |
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|||| |||||| ||||||||||||||||||| | ||| || ||||| |||||||||||||| |||| || ||||||||||| |||| |||| || || | |
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| T |
655132 |
agtgaccatgtaccatttcgaattaaggcattgagctcttcggaaatggcttgtctccaatgagaatgttgcatggcttgtctgatactagagggctcca |
655231 |
T |
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| Q |
117 |
ggttctcaggtaatggatgaacagatgcatggtaaa---gtttctttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcatt |
210 |
Q |
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|| ||| | | ||||| | ||||| |||||| | ||| |||||||| || ||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
655232 |
aattttca-gaagtggatagagagatgtatggtagaattttttgtttggtttaaagatgttgttttgagatctagtaacaacatgatagcgatcatt |
655327 |
T |
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