View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_high_4 (Length: 364)
Name: NF10485_high_4
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 50110138 - 50109790
Alignment:
| Q |
1 |
aatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcttct |
100 |
Q |
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| T |
50110138 |
aatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggagccccaattgctaggcctcttttcttct |
50110039 |
T |
|
| Q |
101 |
cattcccaacttatattgaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110038 |
cattcccaacttatattgaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagt |
50109939 |
T |
|
| Q |
201 |
tgatgcactctttccacctggaacatggtatagtttatttgatttgacgcaagtcatagtttcaaaagatggaaccaacgtgacccttaatgcacccttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50109938 |
tgatgcactctttccacctggaacatggtatagtttatttgatttgacgcaagtcatagtttcaaaagatggaaccaacgtgacccttaatgcacccttg |
50109839 |
T |
|
| Q |
301 |
catgtggtcaatgttcacttgtatcagaattccattctaccaatgcaac |
349 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50109838 |
catgtggtcaatgttcacttgtatcaaaattccattctaccaatgcaac |
50109790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 50120128 - 50119780
Alignment:
| Q |
1 |
aatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcttct |
100 |
Q |
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||||| |||||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
50120128 |
aatgccttggggatgaggtataagcttctaccctatttttacacaataaactacgaggctcatattagtggagctccaattgctaggcctcttttcttct |
50120029 |
T |
|
| Q |
101 |
cattcccaacttatattgaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagt |
200 |
Q |
| |
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|||| |||| |||||||||||||||| | || ||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
50120028 |
catttccaaattatattgaatgttatggcctcagcactcagttcttacttgggagcagtttaatgatttctcctgttcttgagccagggaaaacagaagt |
50119929 |
T |
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| Q |
201 |
tgatgcactctttccacctggaacatggtatagtttatttgatttgacgcaagtcatagtttcaaaagatggaaccaacgtgacccttaatgcacccttg |
300 |
Q |
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| | ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| | | ||||| ||| ||||||||||| |
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| T |
50119928 |
taaagcactttttcctcctggaacatggtacagtttatttgatttgacacaagtcattgtttcaaaagacggaaactatgtgactcttgatgcacccttg |
50119829 |
T |
|
| Q |
301 |
catgtggtcaatgttcacttgtatcagaattccattctaccaatgcaac |
349 |
Q |
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||||| |||||||| || || ||||||||| | ||||| || ||||||| |
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| T |
50119828 |
catgttgtcaatgtgcatttatatcagaatactattcttcctatgcaac |
50119780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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