View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_1 (Length: 575)
Name: NF10485_low_1
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 21 - 562
Target Start/End: Original strand, 36672060 - 36672601
Alignment:
| Q |
21 |
cacgtttctctgattcttattctcagctggatccgaaacacactcttgcgtcgagcaaggattcgaatcagtctcttgaggctcgttcttcacactttcc |
120 |
Q |
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| T |
36672060 |
cacgtttctctgattcttattctcagctggatccgaaacacactcttgcgtcgagcaaggattcgaatcagtctcttgaggctcgttcttcacactttcc |
36672159 |
T |
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| Q |
121 |
accggaaacagccgcgaatctcccggtgaagaattctctcccgcgaacactgagaatttcgcggcgcgttcaatcaacgcggcgttagtaggaaaggtta |
220 |
Q |
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| T |
36672160 |
accggaaacagccgcgaatctcccggtgaagaattctctccggcgaacactgagaatttcgcggcgcgttcaatcaacgcggcgttagtaggaaaagtta |
36672259 |
T |
|
| Q |
221 |
aattcccgttagaagagttcggaagatagggtttctgctcaggcaaatgaagtagctcaactgccagcgtaggtggaagctctaacagtgctgtgaatga |
320 |
Q |
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| T |
36672260 |
aattcccgttagaagagttcggaagatagggtttctgctcaggcaaatgaagtagctcaaccgccagcgtaggtggaagctctaacagtgctgtgaatga |
36672359 |
T |
|
| Q |
321 |
gcttgcgttttccggtgccggcgccggaaccataattccttgaatttcttcgtcaaattgaacagaatcgtcgtgaatagatccacttaatcctactgta |
420 |
Q |
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| T |
36672360 |
gcttgcgttttccggtgccggcgccggaatcataattccttgaatttcttcgtcaaattgaacagaatcgtcgtgaatggatccacttaatcctactgta |
36672459 |
T |
|
| Q |
421 |
gcttgttccattgagcaaagaaaatgaaattaaaaatccaattgaaattttgtttaatttgaagtgtgagagtgttgaaaattttgttcaatgttgtagt |
520 |
Q |
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| T |
36672460 |
gcttgttccattgagcaaagaaaatgaaattaaaaatccaattgaaattttgtttaatttgaagtgtgagagtgttgaaaattttgttcaatgttgtagt |
36672559 |
T |
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| Q |
521 |
tgagtgtgatggcggtcaatctgtttttgtttgtgttgttct |
562 |
Q |
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| T |
36672560 |
tgagtgtgatggcggtcaatctgtttttgtttttgttgttct |
36672601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 21508731 - 21508658
Alignment:
| Q |
151 |
gaattctctcccgcgaacactgagaatttcgcggcgcgttcaatcaacgcggcgttagtaggaaaggttaaatt |
224 |
Q |
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| T |
21508731 |
gaattttctccggcgaaaacggagaatctagcggcgcgttcaaccaacgcggcgttggaagggaaagttaaatt |
21508658 |
T |
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