View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_10 (Length: 312)
Name: NF10485_low_10
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 29930582 - 29930301
Alignment:
| Q |
13 |
gcaaaggagaccctatcatacagaagagatgtgtttcaccaaaagatcaaggaaatacttgttggatttgtggttggatctaattatgcaactttaccga |
112 |
Q |
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| T |
29930582 |
gcaaaggagaccctatcatacagaagagatgtgtttcaccaaaagatcaaggaaatacttgttggatttgtggttggatctatttatgcaactttacgga |
29930483 |
T |
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| Q |
113 |
aggtttcgagcttgacacttcagattaggctcttagagtaatttttattctgcagtggttgattcgactctggaattatttcttttcaaagtaaagtatg |
212 |
Q |
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| T |
29930482 |
aggtttcgagcttgacacttcagattaggctcttagagtaatttttagtctgcagtggttgattcgactctggaaatatttcttttcaaagtaaagtatg |
29930383 |
T |
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| Q |
213 |
ctttcaatgtggtcaagtatgtcatatcaggagagatcgtcattggcaactgcaacataatcatcatcttaaatcctaaaca |
294 |
Q |
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| T |
29930382 |
ctttcaatgtggtcaagtatgtcatatcaggagagatcgtccttggcaactacaacataatcatcatcttaaatcctaaaca |
29930301 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 30608074 - 30608164
Alignment:
| Q |
144 |
cttagagtaatttttattctgcagtggttgattcgactctggaattatttcttttcaaa----gtaaagtatgctttcaatgtggtcaagt |
230 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
30608074 |
cttagagtaattttgattctaaagtggttgattagactctggaaatattttgtttcatagatggtaaagtatgctttcaatgtggtcaagt |
30608164 |
T |
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