View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_11 (Length: 307)
Name: NF10485_low_11
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 30100026 - 30099733
Alignment:
| Q |
14 |
agaaacatgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattctagctgttggcttgttaggaata |
113 |
Q |
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| T |
30100026 |
agaaacatgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattctagctgttggtttgttaggaata |
30099927 |
T |
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| Q |
114 |
taagctgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctg |
213 |
Q |
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| T |
30099926 |
taagctgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctg |
30099827 |
T |
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| Q |
214 |
gtgccggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtaggattgttattgctctttgcataattgatcacagattgtgcatc |
307 |
Q |
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| T |
30099826 |
gtgccggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtaggattgttattgctctttgcataattgatcacagattgtgcatc |
30099733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 30090895 - 30091186
Alignment:
| Q |
19 |
catgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattctagctgttggcttgttaggaatataagc |
118 |
Q |
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| T |
30090895 |
catgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattctagctgttggtttataaggaacaaaagc |
30090994 |
T |
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| Q |
119 |
tgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctggtgcc |
218 |
Q |
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| T |
30090995 |
agcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccaaggaaagccatgtgatggacctcttgatgagtaatgagctgcaattggtgcc |
30091094 |
T |
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| Q |
219 |
ggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtagg---attgttattgctctttgcataattgatcacagattgtgcatc |
307 |
Q |
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| T |
30091095 |
ggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgcgtacttgatcacagattctgcatc |
30091186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 35170737 - 35170858
Alignment:
| Q |
135 |
ccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctggtgccggctttgttcctacaa |
234 |
Q |
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| T |
35170737 |
ccaggtgccataatgtcaggctttaagattcttggatagctttttgaaggacctcttgaactgtaataagcagcagctggtgctggctttgttccaacga |
35170836 |
T |
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| Q |
235 |
atgtttgttgaaatttgatgct |
256 |
Q |
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| T |
35170837 |
atgtttgtcgaaaattgatgct |
35170858 |
T |
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