View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_16 (Length: 202)
Name: NF10485_low_16
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 12425564 - 12425390
Alignment:
| Q |
9 |
agagagatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttag |
108 |
Q |
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| T |
12425564 |
agagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttag |
12425465 |
T |
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| Q |
109 |
tgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacatag |
183 |
Q |
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| T |
12425464 |
tgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacatag |
12425390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 12268136 - 12268295
Alignment:
| Q |
24 |
gcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccc |
123 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| | ||| ||||| | |||||||||| ||||||||||||||||| |
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| T |
12268136 |
gcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccc |
12268235 |
T |
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| Q |
124 |
tgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacatag |
183 |
Q |
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| T |
12268236 |
tgaggttacacccacctggtgcaatacttacaagagaatgcagggaagcatgcaacatag |
12268295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 55955237 - 55955063
Alignment:
| Q |
9 |
agagagatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttag |
108 |
Q |
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|||| ||||||||| |||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | |||||||||| || |
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| T |
55955237 |
agagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcag |
55955138 |
T |
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| Q |
109 |
tgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacatag |
183 |
Q |
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|||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
55955137 |
tgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcttgcaacatag |
55955063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 55958793 - 55958619
Alignment:
| Q |
9 |
agagagatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttag |
108 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||| | |||||||| | || |
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| T |
55958793 |
agagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaacatatgagagtgatctacaagaacttagttacttgaattcag |
55958694 |
T |
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| Q |
109 |
tgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacatag |
183 |
Q |
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||||||||||||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||| |
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| T |
55958693 |
tgatcaaagaaactatgaggttacatccacctgctactttgcttataagagaatgcagggaagcatgcaacatag |
55958619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 41795954 - 41795829
Alignment:
| Q |
60 |
aagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccct--gaggttacacccacctgctacattgctcatgag |
157 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| | ||||||||| |||||| ||| ||||| || |
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| T |
41795954 |
aagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttccaag |
41795855 |
T |
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| Q |
158 |
agaatgcagggaagcgtgcaacatag |
183 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
41795854 |
agaatgcagggaagcgtgcaacatag |
41795829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 7141427 - 7141548
Alignment:
| Q |
19 |
agaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaaga |
118 |
Q |
| |
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||||||||||||||||| ||||| |||| | || |||||| | ||||||||| | |||| || | ||||| | ||||| ||||||||||||||||| |
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| T |
7141427 |
agaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaaga |
7141526 |
T |
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| Q |
119 |
aaccctgaggttacacccacct |
140 |
Q |
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||| ||||||||||||||||| |
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| T |
7141527 |
aacattgaggttacacccacct |
7141548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 7154202 - 7154318
Alignment:
| Q |
24 |
gcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccc |
123 |
Q |
| |
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|||||||||||| |||||||||| | ||||| ||||| | ||||| ||| ||||||| || |||| ||||| |||||||||||||||||||| |
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| T |
7154202 |
gcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaa |
7154301 |
T |
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| Q |
124 |
tgaggttacacccacct |
140 |
Q |
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||||||||||||||||| |
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| T |
7154302 |
tgaggttacacccacct |
7154318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 7131698 - 7131730
Alignment:
| Q |
14 |
gatgaagaaggcacaagctgaaataagagaagc |
46 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
7131698 |
gatgaacaaggcacaagctgaaataagagaagc |
7131730 |
T |
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