View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_3 (Length: 411)
Name: NF10485_low_3
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 5172314 - 5172211
Alignment:
| Q |
234 |
ctatcttaggaaatacaaaagctcccgttcatttcaccattgggtttcaacaatag-caatatcacattggtgttcaaccttgtgaaactttaccattca |
332 |
Q |
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| T |
5172314 |
ctatgttaggaaatacaaaagctccggttcatttcaccattgggtttcaacaatagccaatatcacattggtgatcaaccttatgaaacttcaccattca |
5172215 |
T |
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| Q |
333 |
ttac |
336 |
Q |
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|||| |
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| T |
5172214 |
ttac |
5172211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 5181569 - 5181476
Alignment:
| Q |
7 |
tggagaagcataggtgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
100 |
Q |
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| T |
5181569 |
tggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattgaagtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 5159341 - 5159249
Alignment:
| Q |
7 |
tggagaagcataggtgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
99 |
Q |
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| T |
5159341 |
tggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
49 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
100 |
Q |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
38 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
99 |
Q |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
101 |
aaagagtattatgtggagagtgacaaaacatattttttc |
139 |
Q |
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| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
101 |
aaagagtattatgtggagagtgacaaaacatattt |
135 |
Q |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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