View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_6 (Length: 358)
Name: NF10485_low_6
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 25821548 - 25821879
Alignment:
| Q |
9 |
agcagagacaacatgtaggtggacctcaaactatgaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatga |
108 |
Q |
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| T |
25821548 |
agcagaaacaacatgtaggtggacctcaaactatgaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatga |
25821647 |
T |
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| Q |
109 |
atttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcacaagg |
208 |
Q |
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| T |
25821648 |
atttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcgcaagg |
25821747 |
T |
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| Q |
209 |
caccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtg |
308 |
Q |
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| T |
25821748 |
cgccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtg |
25821847 |
T |
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| Q |
309 |
tttttgagtcctggctgcatcctggtcgatac |
340 |
Q |
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| T |
25821848 |
tttttgagtcctggctgcatcctggtcgatac |
25821879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 330
Target Start/End: Original strand, 25812558 - 25812840
Alignment:
| Q |
43 |
gaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgc |
142 |
Q |
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| T |
25812558 |
gaagaaagattatccaattaatccatccctacctgacataaacaatgagatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgt |
25812657 |
T |
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| Q |
143 |
tcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtg |
242 |
Q |
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| T |
25812658 |
tcaagggtta----ttctcatgattggactgagtgcccctttgttcatccaggggaaa-cgcaaggcgccgtgattcgaggaaatatcattacacatgtg |
25812752 |
T |
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| Q |
243 |
tccattgtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcc |
330 |
Q |
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| T |
25812753 |
tcccttgccccgagtttcggaagggatcatgtagaaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcc |
25812840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 173 - 340
Target Start/End: Original strand, 25815921 - 25816091
Alignment:
| Q |
173 |
gaatgtccctttgctcattctggggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaa---tggat |
269 |
Q |
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| T |
25815921 |
gaatgttcctttgttcatcctggggaaaacttaaagcgccgtgatccgaagcaatataattacagttatctcctttgtcatgcatttcagaaatctggat |
25816020 |
T |
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| Q |
270 |
catgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatac |
340 |
Q |
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| T |
25816021 |
catgctggaaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatac |
25816091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 335
Target Start/End: Original strand, 25818223 - 25818513
Alignment:
| Q |
43 |
gaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgc |
142 |
Q |
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|||||||||||||| || |||| |||| |||||| |||||| |||||| |||||| ||||||||||||||||||| | |||||||| ||||| ||| |
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| T |
25818223 |
gaagaaagattatccaattgatccatccatacctggcataaaaaatgagatatatagcacagatgaatttaggatgtttgcattcaaagggaagccttgt |
25818322 |
T |
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| Q |
143 |
tcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtg |
242 |
Q |
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| T |
25818323 |
ttaagggcttat---cctcatgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcgccgtgatctgaggaaatatcattacacctgtg |
25818419 |
T |
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| Q |
243 |
tccatt-gtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtc |
335 |
Q |
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| T |
25818420 |
tccctttgtcctgagtttcggaaagggtcatgcagcaaaggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtc |
25818513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 43 - 332
Target Start/End: Original strand, 33647755 - 33648041
Alignment:
| Q |
43 |
gaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgc |
142 |
Q |
| |
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|||||||||||||| || |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||||||||| ||| |
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| T |
33647755 |
gaagaaagattatcccattgatccatccctacctgacataaagaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgt |
33647854 |
T |
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| Q |
143 |
tcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtg |
242 |
Q |
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||| ||| | | | ||||||||||||| || || ||||||| |||| ||||||| | |||||| ||| |||| || ||||| | |||||| |||| |
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| T |
33647855 |
tcaagggctta---ttctcatgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgcgatctgaggaaatgtcattacacatgtg |
33647951 |
T |
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| Q |
243 |
tccattgtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctg |
332 |
Q |
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| T |
33647952 |
tcccttgccccgagtttcggaagggatcatgcaacaaaggggatgcttctgaatatgcacatggtatttttgaatgctggcttcatcctg |
33648041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 332
Target Start/End: Original strand, 30122217 - 30122469
Alignment:
| Q |
77 |
gacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctcatgattggacagaat |
176 |
Q |
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||||| ||||||| | |||||| ||| ||||| ||||||||||||| |||||||||||||| ||| ||| ||| | | | ||||||||||||| || | |
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| T |
30122217 |
gacattaagaatgggatatatagtaccgatgagtttaggatgtatacattcaaagtgaagccttgttcaagggctta---ttctcatgattggaccgagt |
30122313 |
T |
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| Q |
177 |
gtccctttgctcattctggggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaatggatcatgcag |
276 |
Q |
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| T |
30122314 |
gtccttttgttcatccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtcccttgtcctgagtttcggaaaggatcttgcag |
30122413 |
T |
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| Q |
277 |
taaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctg |
332 |
Q |
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|||||| ||| | ||| | |||||||| ||| ||||||||| |||||| ||||||| |
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| T |
30122414 |
taaaggagattcttgtgactatgcacacggtatttttgagtgctggcttcatcctg |
30122469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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