View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10485_low_7 (Length: 357)
Name: NF10485_low_7
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 41479428 - 41479766
Alignment:
| Q |
1 |
tatcaattgtctctctttgtagtatggtttaaatttttgtcttgaaacatttaagttaaattcatttgaaatcgtacctggccatagaaataaatcatta |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41479428 |
tatcaattgtctctctttgtagtttggtttaaatttttgtcttgaaacatttaagttaaattcatttgaaatcatacctggccatagaaataaatcatta |
41479527 |
T |
|
| Q |
101 |
tattatccatcattacattatttccaaacaataagaaatcattagtttgaactgtatttttaaaaattagcttcaagaaagatcttcagacattagtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479528 |
tattatccatcattacattatttccaaacaataagaaatcattagtttgaactgtatttttaaaaattagcttcaagaaagatcttcagacattagtgtg |
41479627 |
T |
|
| Q |
201 |
gcaactaccattctc--tgagaaggaaactgttccctcacgagcccttcgtcgcttataggagaaattcgtattgaactacttaagatnnnnnnnnntat |
298 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41479628 |
gcgactaccattctctttgagaaggaaactgttccctcgcgagcccttcgtcgcttataggagaaattcgtattgaactacttaagataaaaaaaa--at |
41479725 |
T |
|
| Q |
299 |
cagtagttgaactcaactttcgtgtggatgaagtttacaac |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479726 |
cagtagttgaactcaactttcgtgtggatgaagtttacaac |
41479766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 41487465 - 41487528
Alignment:
| Q |
17 |
ttgtagtatggtttaaatttttgtcttgaaacatttaagttaaattcatttgaaatcgtacctg |
80 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41487465 |
ttgtagtctggtttaaatttttgtcttgaaacatttaagttaaattcatttgaaatcgtacctg |
41487528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 40753788 - 40753830
Alignment:
| Q |
25 |
tggtttaaatttttgtcttgaaacatttaagttaaattcattt |
67 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40753788 |
tggtttaaatttttgtctcgaaacatttaagttaaattcattt |
40753830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41486582 - 41486677
Alignment:
| Q |
1 |
tatcaattgtctctcttt-gtagtatggtttaaatttttgtcttgaaacatttaagttaaattcatttgaaatcgtacctggccatagaaataaatcatt |
99 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||| |||| |
|
|
| T |
41486582 |
tatcaattgtctcccttttgtagtctggtttaaatttttgtcttg--------aagttaaattcatttgaaatcgtacctgaacctaaaaataaagcatt |
41486673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 41472357 - 41472428
Alignment:
| Q |
216 |
tgagaaggaaactgttccctcacgagcccttcgtcgc-ttataggagaaattcgtattgaactacttaagat |
286 |
Q |
| |
|
||||||||||| ||||||||| | || |||||||| | |||||||||||||||||| || ||||||| |||| |
|
|
| T |
41472357 |
tgagaaggaaattgttccctcgccagaccttcgtcacattataggagaaattcgtagtgtactactttagat |
41472428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 16407054 - 16406983
Alignment:
| Q |
216 |
tgagaaggaaactgttccctcacgagcccttcgtcgctt-ataggagaaattcgtattgaactacttaagat |
286 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| | | |||||||||||||||| |||||||||| |||| |
|
|
| T |
16407054 |
tgagaaggaaattgttccctcaccagaccttcgtcacatcataggagaaattcgtagtgaactactttagat |
16406983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University