View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10485_low_8 (Length: 330)

Name: NF10485_low_8
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10485_low_8
NF10485_low_8
[»] chr7 (11 HSPs)
chr7 (14-322)||(29578406-29578714)
chr7 (14-322)||(29582575-29582883)
chr7 (17-258)||(8609049-8609290)
chr7 (17-256)||(7878530-7878769)
chr7 (23-256)||(8383676-8383909)
chr7 (15-262)||(8580827-8581074)
chr7 (17-256)||(8589770-8590009)
chr7 (17-178)||(8601103-8601264)
chr7 (38-141)||(8569464-8569567)
chr7 (87-257)||(8544835-8545005)
chr7 (17-157)||(8575431-8575571)
[»] chr8 (1 HSPs)
chr8 (41-258)||(12527660-12527877)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 29578714 - 29578406
Alignment:
Q  14 gttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578714 gttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttc 29578615  T
Q  114 tcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578614 tcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcag 29578515  T
Q  214 cagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578514 cagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaa 29578415  T
Q  314 gttcttctc 322  Q
    ||| |||||    
T  29578414 gttgttctc 29578406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 29582883 - 29582575
Alignment:
Q  14 gttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttc 113  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||||||| |  ||||||||| ||  ||| ||||||| ||||||||||||||| |||    
T  29582883 gttatcctccattactttactcattttgtaaagatagtcgtccaaagcattcattgctctagctctcatttggaacttcagatcttcaaccttgaaattc 29582784  T
Q  114 tcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcag 213  Q
    || |||||||||||||||| ||||||||||| |||||| | ||||| |||  ||||||||||||| |||||  | ||||||||||| |||||||||||||    
T  29582783 tctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggtttcttcctcag 29582684  T
Q  214 cagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaa 313  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||| | |||||| || |||||| ||||||  ||||||| ||||||||||| |||    
T  29582683 cagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaacaaacccagcaa 29582584  T
Q  314 gttcttctc 322  Q
    ||| |||||    
T  29582583 gttgttctc 29582575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 8609049 - 8609290
Alignment:
Q  17 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 116  Q
    ||||| ||||||||| | | | |||||||| ||||| |||||| |||| |  ||| || |||||| || ||||||||  |||||  | ||||| ||||||    
T  8609049 atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca 8609148  T
Q  117 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 216  Q
    |||||||| ||||||| ||||||||||| |||||||||||  | ||| || |||||||| || || ||  ||||||| ||| | ||||||||||| ||||    
T  8609149 gcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcag 8609248  T
Q  217 tgacatttaatataccatctgcatcgatagcaaaacatactt 258  Q
     |||||||||||||||||| ||||| |||||||| |||||||    
T  8609249 agacatttaatataccatcagcatctatagcaaagcatactt 8609290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 7878769 - 7878530
Alignment:
Q  17 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 116  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  7878769 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 7878670  T
Q  117 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 216  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  || |    
T  7878669 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg 7878570  T
Q  217 tgacatttaatataccatctgcatcgatagcaaaacatac 256  Q
     |||||||||||||||||| ||||| ||| ||||||||||    
T  7878569 agacatttaatataccatcagcatctatatcaaaacatac 7878530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 8383909 - 8383676
Alignment:
Q  23 cattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttct 122  Q
    ||||||||| ||| | |||||||||||||| ||||||||||| |  ||| || ||||||    ||||||||| |||||| ||||||| ||||| || |||    
T  8383909 cattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgtcttcagccttgaaattctctgcctct 8383810  T
Q  123 tggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacat 222  Q
    |||||||||| ||||||||| | |||||| |  |||| ||| |||||  ||||||| || ||   |||||| |||   || ||||| | ||||| |||||    
T  8383809 tggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattcccacaggtatcttctttagcagagacat 8383710  T
Q  223 ttaatataccatctgcatcgatagcaaaacatac 256  Q
    |||||||||||||  |||| | || |||||||||    
T  8383709 ttaatataccatcaacatctacagaaaaacatac 8383676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 8580827 - 8581074
Alignment:
Q  15 ttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttc-tcttgaaacttcatatcttcaaccttgaatttc 113  Q
    ||||||||||||||||| |||  ||||||||||||||| |||||||||||||  ||| || ||||| ||||| |||| ||| |||| | |||| ||  |     
T  8580827 ttatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttg-aactccatgtcttgagccttaaaaatt 8580925  T
Q  114 tcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcag 213  Q
    ||||||| |   ||||||  ||||||||| |   |||||||||||| ||| ||||| |||||||| ||  |  ||||| |  || ||||||||||||| |    
T  8580926 tcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttgtttcttcctctg 8581025  T
Q  214 cagtgacatttaatataccatctgcatcgatagcaaaacatactttgat 262  Q
    ||| |||||||||||||||||| | ||| |||| ||| ||| |||||||    
T  8581026 cagagacatttaatataccatcagaatctatagaaaagcattctttgat 8581074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 8589770 - 8590009
Alignment:
Q  17 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 116  Q
    ||||| ||||||||| ||| | | |||||||||||| || |||||||| |  |||||| ||||||    |  |||||| |||||| ||||||| | ||||    
T  8589770 atccttcattactttcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctca 8589869  T
Q  117 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 216  Q
    ||||| |||||||||| |||||||||||   |||  ||||||| ||| ||||| |||||||| || |   | ||||| ||| |  |||||||||||||||    
T  8589870 gcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgctttcttcctcagcag 8589969  T
Q  217 tgacatttaatataccatctgcatcgatagcaaaacatac 256  Q
      || |||||||||||||| ||||| |||| ||| |||||    
T  8589970 acacgtttaatataccatcagcatctatagaaaagcatac 8590009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 8601103 - 8601264
Alignment:
Q  17 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcatatcttcaaccttgaatttctc 115  Q
    ||||| ||||||||| ||| |  ||||||||||||| |||| | |||| |  ||| || |||||| |||||| |||||| |||||| | ||||| |||||    
T  8601103 atccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaa-cttcatgtcttcatctttgaaattctc 8601201  T
Q  116 agcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt 178  Q
    ||||||||||||||||| |||||||||||  ||||| |||||||  || ||||| ||||||||    
T  8601202 agcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgt 8601264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 8569464 - 8569567
Alignment:
Q  38 tttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctca 137  Q
    ||||||||||||||| ||||||||||||   |||  | |||||| ||  |||||||| |||| | ||||||| ||||||||||| |||||||||| ||||    
T  8569464 tttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctca 8569563  T
Q  138 attt 141  Q
    ||||    
T  8569564 attt 8569567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 8544835 - 8545005
Alignment:
Q  87 aacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcac 186  Q
    |||||||| |||| | ||||||| || |||||||| |||||||||| |||||||||||   |||| | ||||| ||| ||| | |||||||| || |||     
T  8544835 aacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcat 8544934  T
Q  187 tcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatact 257  Q
    ||||| | ||| | ||||||||    |||| ||| ||||||| |||||  ||||| |||||||| ||||||    
T  8544935 tcttactaccactggtttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatact 8545005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 8575431 - 8575571
Alignment:
Q  17 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcatatcttcaaccttgaatttctc 115  Q
    ||||| ||||| ||| ||||  |||| ||||||||| ||||| |||||||  ||| || |||||| |||||| || ||| |||| | |||||||  | ||    
T  8575431 atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaa-ctccatgtcttgagccttgaaaatttc 8575529  T
Q  116 agcttcttggatcattcgctcaatttcttgagttgaaagtct 157  Q
    ||||||||| ||||||| | ||||||||||||| || |||||    
T  8575530 agcttcttgaatcattctcgcaatttcttgagtcgatagtct 8575571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 12527660 - 12527877
Alignment:
Q  41 gtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatt 140  Q
    ||||||||| || ||||||||||| |  ||| || |||||| ||  ||||||||||||||| ||||||| ||||||||||| |||||||||| | |||||    
T  12527660 gtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatt 12527759  T
Q  141 tcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcat 240  Q
    |||| | |||| | ||||| ||| |||||||||||||| || ||  ||||||| ||| | |||| |||||  |||| ||| ||||||||||| || ||||    
T  12527760 tcttcacttgataatcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcat 12527859  T
Q  241 cgatagcaaaacatactt 258  Q
    | |||||||| |||||||    
T  12527860 ctatagcaaagcatactt 12527877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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