View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10485_low_9 (Length: 317)
Name: NF10485_low_9
Description: NF10485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10485_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 5270860 - 5270582
Alignment:
| Q |
24 |
tataattaatggctagctcaattcacaattaacataattgagcaaaaggatgaacattcataagataaaggaccaaatgaatctttcaaaagataaatga |
123 |
Q |
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| T |
5270860 |
tataattaatggctagctcaattcacaattaacagaattgagcaaaaggatgaacattcagaagataaaggaccaaatgaatctttcaaaagataaatga |
5270761 |
T |
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| Q |
124 |
ccaaaataaattttgagcaaaagatcaagatcaaaagtatgtttaaaccttttatatatgtttgagtaagaagagtgagtatggtatggagtccaatatc |
223 |
Q |
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| T |
5270760 |
ccaaaatgaattttgagtaaaagatcaagatcaaaagtatgtttaagccttttatatatgtttgagtaagaagagtgagtatggtatggaatccaatatc |
5270661 |
T |
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| Q |
224 |
atatgaaaacctgagtgttgattaacgtataaatgagataactcatatatcaaatgtaggggtgggtatgggtcggtta |
302 |
Q |
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| T |
5270660 |
atatgaaaatctgagtgttgattaacgtataaatgagataactcatatatcaaatgtaggggtgggtatggttcggtta |
5270582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34810690 - 34810723
Alignment:
| Q |
1 |
tggttgttcaaatatcatttctctataattaatg |
34 |
Q |
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| T |
34810690 |
tggttgttcaaatatcatttctctttaattaatg |
34810723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45083003 - 45082974
Alignment:
| Q |
1 |
tggttgttcaaatatcatttctctataatt |
30 |
Q |
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| T |
45083003 |
tggttgttcaaatatcatttctctataatt |
45082974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50721794 - 50721826
Alignment:
| Q |
1 |
tggttgttcaaatatcatttctctataattaat |
33 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
50721794 |
tggttgttcaaatatcatttctctattattaat |
50721826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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