View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10486_high_9 (Length: 303)
Name: NF10486_high_9
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 46124246 - 46124535
Alignment:
| Q |
18 |
cattaggtaatattgctggcaattccctgactgcaagggatcttgttttaaatcatggtgcactttctccactattgtctttgatgtggaatccttcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46124246 |
cattaggtaatattgctggcaattccctgaccgcaagggatattgttttaaatcatggtgcactttctccactattgtctttgatgtggaatccttcttc |
46124345 |
T |
|
| Q |
118 |
aacnnnnnnntctacatggaatattgctacatgggcttttttcaacttcactcgcggaaagcctcttctaactcttcaggatcaggttgggaaaaatttg |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46124346 |
aacaaaaaaatctacatggaatattgctacatgggcttttttcaacttcactcgcggaaagcctcttctaactcttcagaatcaggttgggaaaaatttg |
46124445 |
T |
|
| Q |
218 |
cacggatagcatgtgcagtaaatttagcatatcctctataaat---------taatgaatttacacattgtttgttatcttctctgctcc |
298 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46124446 |
caaggatagcatgtgcagtaaatttagcatatcctatataaattaataaatataatgaatttacacattgtttgttatcttctcttctcc |
46124535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 46703039 - 46703276
Alignment:
| Q |
18 |
cattaggtaatattgctggcaattccctgactgcaagggatcttgttttaaatcatggtgcactttctccactattgtctttgatgtggaatccttcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| | |
|
|
| T |
46703039 |
cattaggtaatattgctggcaattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtctctgttgtggaatccttctac |
46703138 |
T |
|
| Q |
118 |
aacnnnnnnntctacatggaatattgctacatgggcttttttcaacttcactcgcggaaagcctcttctaactcttcaggatcaggttgggaaaaatttg |
217 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||| ||||| | | ||| | |||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
46703139 |
aa---aaaaatctacatggaggattgctatatgggcttttgtcaacattattcgtgaaaagcctcctctaactcttgaggatcaggttgggaaaactttg |
46703235 |
T |
|
| Q |
218 |
cacggatagcatgtgcagtaaatttagcatatcctctataa |
258 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46703236 |
caaggatagcatgtgcagtaaatttagcatatcctatataa |
46703276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 46130255 - 46130501
Alignment:
| Q |
18 |
cattaggtaatattgctggcaattccctgactgcaagggatcttgttttaaatcatggtgcactttctccactattgtctttgatgtggaatccttcttc |
117 |
Q |
| |
|
||||||||||||||||||| | ||| ||| || | |||| ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| | |
|
|
| T |
46130255 |
cattaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctgttgtggaatccttctgc |
46130354 |
T |
|
| Q |
118 |
aacnnnnnnntctacatggaatattgctacatgggcttttttcaacttcactcgcggaaagcctcttctaactcttcaggatcaggttgggaaaaatttg |
217 |
Q |
| |
|
||| |||||||||| ||||||| |||||||||| |||| | | || || |||| || ||||||||| |||||||||||||||||| |||| |
|
|
| T |
46130355 |
aacagaaaaatctacatggaggattgctatatgggcttttgccaacgttattcctgggaagcttccactaactcttgaggatcaggttgggaaaagtttg |
46130454 |
T |
|
| Q |
218 |
cacggatagcatgtgcagtaaatttagcatatcctctataaattaat |
264 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
46130455 |
caaggatagcatgtgcagtaaatttagcatatcctatataatttaat |
46130501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University