View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_1 (Length: 658)

Name: NF10486_low_1
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_1
NF10486_low_1
[»] chr2 (9 HSPs)
chr2 (54-648)||(14877953-14878545)
chr2 (21-54)||(28609961-28609994)
chr2 (21-55)||(25124043-25124077)
chr2 (21-55)||(45003661-45003695)
chr2 (21-54)||(1691427-1691460)
chr2 (21-54)||(4289028-4289061)
chr2 (21-54)||(7364788-7364821)
chr2 (21-54)||(9542630-9542663)
chr2 (24-56)||(11707585-11707617)
[»] chr8 (23 HSPs)
chr8 (21-56)||(11697118-11697153)
chr8 (21-55)||(1945196-1945230)
chr8 (21-54)||(8160420-8160453)
chr8 (21-54)||(8763021-8763054)
chr8 (24-59)||(44940529-44940564)
chr8 (21-55)||(28940713-28940747)
chr8 (21-54)||(2680236-2680269)
chr8 (21-54)||(2961009-2961042)
chr8 (21-54)||(4631641-4631674)
chr8 (21-54)||(7391330-7391363)
chr8 (21-54)||(12249912-12249945)
chr8 (21-54)||(18375558-18375591)
chr8 (21-54)||(23626056-23626089)
chr8 (21-54)||(25833998-25834031)
chr8 (21-54)||(27272694-27272727)
chr8 (21-54)||(32569577-32569610)
chr8 (21-54)||(36778488-36778521)
chr8 (21-54)||(39204873-39204906)
chr8 (21-54)||(39445262-39445295)
chr8 (21-54)||(40586443-40586476)
chr8 (21-54)||(41158652-41158685)
chr8 (21-54)||(41908018-41908051)
chr8 (24-56)||(30548279-30548311)
[»] scaffold0381 (1 HSPs)
scaffold0381 (21-54)||(11240-11273)
[»] chr7 (15 HSPs)
chr7 (21-54)||(24682278-24682311)
chr7 (21-54)||(27840522-27840555)
chr7 (19-54)||(49023319-49023354)
chr7 (21-55)||(15595433-15595467)
chr7 (21-59)||(23476582-23476620)
chr7 (21-54)||(691297-691330)
chr7 (21-54)||(9226021-9226054)
chr7 (21-54)||(12960615-12960648)
chr7 (21-54)||(17817727-17817760)
chr7 (21-54)||(21669232-21669265)
chr7 (21-54)||(29469226-29469259)
chr7 (21-54)||(31896814-31896847)
chr7 (21-54)||(38434278-38434311)
chr7 (21-54)||(39278246-39278279)
chr7 (21-54)||(39647982-39648015)
[»] chr5 (18 HSPs)
chr5 (21-54)||(752056-752089)
chr5 (21-54)||(43136274-43136307)
chr5 (21-56)||(25695537-25695572)
chr5 (21-55)||(3086432-3086466)
chr5 (21-55)||(12702060-12702094)
chr5 (21-55)||(42819329-42819363)
chr5 (21-54)||(1685048-1685081)
chr5 (21-54)||(5620644-5620677)
chr5 (21-54)||(7863529-7863562)
chr5 (21-54)||(9702717-9702750)
chr5 (21-54)||(9809821-9809854)
chr5 (21-54)||(13596927-13596960)
chr5 (21-54)||(22602635-22602668)
chr5 (21-54)||(23920292-23920325)
chr5 (21-54)||(34719466-34719499)
chr5 (21-54)||(36366125-36366158)
chr5 (24-57)||(37464589-37464622)
chr5 (21-54)||(38041491-38041524)
[»] chr4 (21 HSPs)
chr4 (21-54)||(8964842-8964875)
chr4 (21-54)||(9887271-9887304)
chr4 (21-54)||(16653203-16653236)
chr4 (21-54)||(26870029-26870062)
chr4 (21-54)||(29713832-29713865)
chr4 (21-56)||(3759288-3759323)
chr4 (21-56)||(39713494-39713529)
chr4 (21-55)||(574176-574210)
chr4 (21-54)||(2118199-2118232)
chr4 (21-54)||(5483042-5483075)
chr4 (21-54)||(5759350-5759383)
chr4 (21-54)||(8989209-8989242)
chr4 (21-54)||(12680630-12680663)
chr4 (21-54)||(15650486-15650519)
chr4 (21-54)||(27892644-27892677)
chr4 (21-54)||(35707658-35707691)
chr4 (21-54)||(37352109-37352142)
chr4 (21-54)||(37357008-37357041)
chr4 (21-54)||(39404592-39404625)
chr4 (21-54)||(43014591-43014624)
chr4 (24-56)||(14828801-14828833)
[»] chr1 (21 HSPs)
chr1 (21-54)||(1375990-1376023)
chr1 (21-54)||(19320421-19320454)
chr1 (21-54)||(22194468-22194501)
chr1 (21-54)||(24289201-24289234)
chr1 (21-54)||(28573168-28573201)
chr1 (21-54)||(33074232-33074265)
chr1 (24-54)||(12245172-12245202)
chr1 (21-54)||(3929748-3929781)
chr1 (21-54)||(4893976-4894009)
chr1 (21-54)||(10763596-10763629)
chr1 (21-54)||(23909716-23909749)
chr1 (21-54)||(28565430-28565463)
chr1 (21-54)||(28631819-28631852)
chr1 (21-54)||(29693396-29693429)
chr1 (21-54)||(29840690-29840723)
chr1 (21-58)||(33363580-33363617)
chr1 (21-54)||(38896823-38896856)
chr1 (21-54)||(42682600-42682633)
chr1 (21-54)||(47137867-47137900)
chr1 (21-54)||(48183176-48183209)
chr1 (21-54)||(52037391-52037424)
[»] scaffold0051 (1 HSPs)
scaffold0051 (21-56)||(61721-61756)
[»] chr6 (11 HSPs)
chr6 (21-59)||(1363231-1363269)
chr6 (21-55)||(4110069-4110103)
chr6 (21-54)||(875539-875572)
chr6 (21-54)||(1932348-1932381)
chr6 (21-54)||(6966237-6966270)
chr6 (21-54)||(11681670-11681703)
chr6 (21-54)||(18389168-18389201)
chr6 (21-54)||(18985192-18985225)
chr6 (24-57)||(24238119-24238152)
chr6 (21-54)||(24447803-24447836)
chr6 (21-54)||(33319057-33319090)
[»] chr3 (14 HSPs)
chr3 (21-55)||(22522279-22522313)
chr3 (21-59)||(52843193-52843231)
chr3 (21-54)||(188744-188777)
chr3 (21-54)||(4137400-4137433)
chr3 (21-54)||(5240996-5241029)
chr3 (21-54)||(8396774-8396807)
chr3 (21-54)||(18688682-18688715)
chr3 (21-54)||(21165931-21165964)
chr3 (21-54)||(22477914-22477947)
chr3 (21-54)||(22759057-22759090)
chr3 (21-54)||(26100778-26100811)
chr3 (21-54)||(26776434-26776467)
chr3 (21-54)||(35861010-35861043)
chr3 (21-54)||(41053812-41053845)
[»] scaffold0484 (1 HSPs)
scaffold0484 (21-54)||(8176-8209)
[»] scaffold0249 (1 HSPs)
scaffold0249 (21-54)||(24919-24952)
[»] scaffold0103 (1 HSPs)
scaffold0103 (21-54)||(13031-13064)
[»] scaffold0088 (1 HSPs)
scaffold0088 (21-54)||(52693-52726)
[»] scaffold0069 (1 HSPs)
scaffold0069 (21-54)||(14656-14689)
[»] scaffold0057 (1 HSPs)
scaffold0057 (21-54)||(17401-17434)
[»] scaffold0026 (1 HSPs)
scaffold0026 (21-54)||(92633-92666)
[»] scaffold0047 (1 HSPs)
scaffold0047 (24-56)||(25612-25644)
[»] scaffold0005 (1 HSPs)
scaffold0005 (24-56)||(10876-10908)


Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 54 - 648
Target Start/End: Original strand, 14877953 - 14878545
Alignment:
Q  54 taattaattgaaaagatattttttatcccaaatatgacctaatgagtttggatagaaggccaaatctcctaggtgatagtggctatacgaagaggtaacc 153  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14877953 taattaattggaaagatattttttatcccaaatatgacctaatgagtttggatagaaggccaaatctcctaggtgatagtggctatacgaagaggtaacc 14878052  T
Q  154 taggaggcnnnnnnngatatgatttcttagacataaaaacaatgtatttccattacacgtttccttgaagctttgctctaaaagttaaggggtgaatcgt 253  Q
    ||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14878053 taggaggcaaaaaa-gatatgatttcttagacataaaaacaatatatttccattacacgtttccttgaagctttactctaaaagttaaggggtgaatcgt 14878151  T
Q  254 ctctcctatatatgtttatatttgtgaacaacaatattccaaaactaatataatcattgcatgaaagcaatcaagaagttgttataaaaaacaagtaatg 353  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14878152 ctctcctatatatgtttatatttgtgaacaacaatattctaaa-ctaatataatcattgcatgaaagcaatcaagaagttgttataaaaaacaagtaatg 14878250  T
Q  354 tgtatacaaaatgaaagaaatagtctatagaatgataccaatagaagaacaacacctcattgtgctccaaccaagagatgaaaactgataaaatcatgtc 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  14878251 tgtatacaaaatgaaagaaatagtctatagaatgataccaatagaagaacaacacctcattgtgctccaaacaagagatgaaaactgataaaataatgtc 14878350  T
Q  454 gataacactgccaaaaaagttataaagcagacatgttttgggagcggtgatcgtatatcaatgagtcaggaaaatatgtgaaatttggaatggatcagaa 553  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14878351 gataacactgccaaaaaagttataaagaagacatgttttgggagcggtgatcgtatatcaaagagtcacgaaaatatgtgaaatttggaatggatcagaa 14878450  T
Q  554 gaaaatccactgcattgaatatagattagattcattggacgtttatcattcaagtattgtgtgtcgtgcacaaaattgccaccgcctatgcttct 648  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14878451 gaaaatccagtgcattgaatatagattagattcattggacgtttatcattcaagtattgtgtgtcgtacacaaaattgccaccgcctatgtttct 14878545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 28609961 - 28609994
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  28609961 ttcaacccgtgcaaagcacgggtttgtaactagt 28609994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 25124077 - 25124043
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  25124077 ttcaacccgtgcgaagcacgggtttgtaactagta 25124043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 45003695 - 45003661
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  45003695 ttcaacccgtgcgaagcacgggtttgtaactagta 45003661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 1691460 - 1691427
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  1691460 ttcaacccgtgcgaagcacgggtttgtaactagt 1691427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 4289061 - 4289028
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  4289061 ttcaacccgtgcgaagcacgggtttgtaactagt 4289028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 7364788 - 7364821
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  7364788 ttcaacccgtgcgaagcacgggtttgtaactagt 7364821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 9542663 - 9542630
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  9542663 ttcaacccgtgcgaagcacgggtttgtaactagt 9542630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 11707585 - 11707617
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||| |||||||||||||||||||||||    
T  11707585 aacccgtgcgaagcacgggtttgtaactagtaa 11707617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 11697118 - 11697153
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  11697118 ttcaacccgtgcaaagcacgggtttgtaactagtaa 11697153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 1945196 - 1945230
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||||||||||||||||||||||||||    
T  1945196 ttcaacccgtgcaaagcacgggtttgtaactagta 1945230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 8160453 - 8160420
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  8160453 ttcaacccgtgcaaagcacgggtttgtaactagt 8160420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 8763021 - 8763054
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  8763021 ttcaacccgtgcaaagcacgggtttgtaactagt 8763054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 44940529 - 44940564
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaatta 59  Q
    ||||||||| ||||||||||||||||||||||||||    
T  44940529 aacccgtgcgaagcacgggtttgtaactagtaatta 44940564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 28940747 - 28940713
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  28940747 ttcaacccgtgcgaagcacgggtttgtaactagta 28940713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 2680269 - 2680236
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  2680269 ttcaacccgtgcgaagcacgggtttgtaactagt 2680236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 2961042 - 2961009
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  2961042 ttcaacccgtgcgaagcacgggtttgtaactagt 2961009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 4631674 - 4631641
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  4631674 ttcaacccgtgcgaagcacgggtttgtaactagt 4631641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 7391330 - 7391363
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  7391330 ttcaacccgtgcgaagcacgggtttgtaactagt 7391363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 12249945 - 12249912
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  12249945 ttcaacccgtgcgaagcacgggtttgtaactagt 12249912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 18375591 - 18375558
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  18375591 ttcaacccgtgcgaagcacgggtttgtaactagt 18375558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 23626089 - 23626056
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  23626089 ttcaacccgtgcgaagcacgggtttgtaactagt 23626056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 25834031 - 25833998
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||| ||||||||||||||||||||||||||||    
T  25834031 ttcaatccgtgcaaagcacgggtttgtaactagt 25833998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 27272694 - 27272727
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  27272694 ttcaacccgtgcgaagcacgggtttgtaactagt 27272727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 32569610 - 32569577
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  32569610 ttcaacccgtgcgaagcacgggtttgtaactagt 32569577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 36778488 - 36778521
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  36778488 ttcaacccgtgcgaagcacgggtttgtaactagt 36778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 39204873 - 39204906
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||| ||||||||||||||||||||||||||    
T  39204873 ttcaacctgtgcaaagcacgggtttgtaactagt 39204906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 39445262 - 39445295
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  39445262 ttcaacccgtgcgaagcacgggtttgtaactagt 39445295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 40586476 - 40586443
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  40586476 ttcaacccgtgcgaagcacgggtttgtaactagt 40586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 41158652 - 41158685
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  41158652 ttcaacccgtgcgaagcacgggtttgtaactagt 41158685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 41908018 - 41908051
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  41908018 ttcaacccgtgcgaagcacgggtttgtaactagt 41908051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 30548311 - 30548279
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||||| |||||||||||||||||||||    
T  30548311 aacccgtgcaacgcacgggtttgtaactagtaa 30548279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 11240 - 11273
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  11240 ttcaacccgtgcaaagcacgggtttgtaactagt 11273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 24682311 - 24682278
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  24682311 ttcaacccgtgcaaagcacgggtttgtaactagt 24682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 27840522 - 27840555
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  27840522 ttcaacccgtgcaaagcacgggtttgtaactagt 27840555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 49023319 - 49023354
Alignment:
Q  19 atttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||||| |||||||||||||||||||||    
T  49023319 atttcaacccgtgcgaagcacgggtttgtaactagt 49023354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 15595433 - 15595467
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  15595433 ttcaacccgtgcgaagcacgggtttgtaactagta 15595467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 23476620 - 23476582
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaatta 59  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  23476620 ttcaacccgtgtgaagcacgggtttgtaactagtaatta 23476582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 691297 - 691330
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  691297 ttcaacccgtgcgaagcacgggtttgtaactagt 691330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 9226054 - 9226021
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  9226054 ttcaacccgtgcgaagcacgggtttgtaactagt 9226021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 12960615 - 12960648
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  12960615 ttcaacccgtgcgaagcacgggtttgtaactagt 12960648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 17817727 - 17817760
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  17817727 ttcaacccgtgcgaagcacgggtttgtaactagt 17817760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21669265 - 21669232
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  21669265 ttcaacccgtgcgaagcacgggtttgtaactagt 21669232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 29469226 - 29469259
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  29469226 ttcaacccgtgcaaagcacgggtttataactagt 29469259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 31896847 - 31896814
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  31896847 ttcaacccgtgcgaagcacgggtttgtaactagt 31896814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 38434311 - 38434278
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  38434311 ttcaacccgtgcgaagcacgggtttgtaactagt 38434278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 39278246 - 39278279
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  39278246 ttcaacccgtgcgaagcacgggtttgtaactagt 39278279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 39648015 - 39647982
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  39648015 ttcaacccgtgcgaagcacgggtttgtaactagt 39647982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 752089 - 752056
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  752089 ttcaacccgtgcaaagcacgggtttgtaactagt 752056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 43136307 - 43136274
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  43136307 ttcaacccgtgcaaagcacgggtttgtaactagt 43136274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 25695572 - 25695537
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    |||||||||||| |||||||||||||||||||||||    
T  25695572 ttcaacccgtgcgaagcacgggtttgtaactagtaa 25695537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 3086466 - 3086432
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  3086466 ttcaacccgtgcgaagcacgggtttgtaactagta 3086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 12702094 - 12702060
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  12702094 ttcaacccgtgcgaagcacgggtttgtaactagta 12702060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 42819363 - 42819329
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  42819363 ttcaacccgtgcgaagcacgggtttgtaactagta 42819329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 1685081 - 1685048
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  1685081 ttcaacccgtgcgaagcacgggtttgtaactagt 1685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 5620677 - 5620644
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  5620677 ttcaacccgtgcgaagcacgggtttgtaactagt 5620644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 7863562 - 7863529
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  7863562 ttcaacccgtgcgaagcacgggtttgtaactagt 7863529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 9702717 - 9702750
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  9702717 ttcaacccgtgcgaagcacgggtttgtaactagt 9702750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 9809854 - 9809821
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  9809854 ttcaacccgtgcgaagcacgggtttgtaactagt 9809821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 13596927 - 13596960
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  13596927 ttcaacccgtgcgaagcacgggtttgtaactagt 13596960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 22602668 - 22602635
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  22602668 ttcaacccgtgcgaagcacgggtttgtaactagt 22602635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 23920292 - 23920325
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  23920292 ttcaacccgtgcgaagcacgggtttgtaactagt 23920325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 34719466 - 34719499
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  34719466 ttcaacccgtgcgaagcacgggtttgtaactagt 34719499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 36366158 - 36366125
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  36366158 ttcaacccgtgcgaagcacgggtttgtaactagt 36366125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 37464589 - 37464622
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaat 57  Q
    ||||||||||| ||||||||||||||||||||||    
T  37464589 aacccgtgcaacgcacgggtttgtaactagtaat 37464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 38041524 - 38041491
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  38041524 ttcaacccgtgcgaagcacgggtttgtaactagt 38041491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 8964842 - 8964875
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  8964842 ttcaacccgtgcaaagcacgggtttgtaactagt 8964875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 9887304 - 9887271
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  9887304 ttcaacccgtgcaaagcacgggtttgtaactagt 9887271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 16653203 - 16653236
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  16653203 ttcaacccgtgcaaagcacgggtttgtaactagt 16653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 26870062 - 26870029
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  26870062 ttcaacccgtgcaaagcacgggtttgtaactagt 26870029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 29713832 - 29713865
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  29713832 ttcaacccgtgcaaagcacgggtttgtaactagt 29713865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 3759288 - 3759323
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    |||||||||||| |||||||||||||||||||||||    
T  3759288 ttcaacccgtgcgaagcacgggtttgtaactagtaa 3759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 39713529 - 39713494
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    |||||||||||| |||||||||||||||||||||||    
T  39713529 ttcaacccgtgcgaagcacgggtttgtaactagtaa 39713494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 574210 - 574176
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  574210 ttcaacccgtgcgaagcacgggtttgtaactagta 574176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 2118199 - 2118232
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  2118199 ttcaacccgtgcgaagcacgggtttgtaactagt 2118232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5483042 - 5483075
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  5483042 ttcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5759350 - 5759383
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  5759350 ttcaacccgtgcgaagcacgggtttgtaactagt 5759383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 8989209 - 8989242
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  8989209 ttcaacccgtgcaaaacacgggtttgtaactagt 8989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 12680663 - 12680630
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  12680663 ttcaacccgtgcgaagcacgggtttgtaactagt 12680630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 15650519 - 15650486
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  15650519 ttcaacccgtgcgaagcacgggtttgtaactagt 15650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 27892677 - 27892644
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  27892677 ttcaacccgtgcgaagcacgggtttgtaactagt 27892644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 35707691 - 35707658
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  35707691 ttcaacccgtgcgaagcacgggtttgtaactagt 35707658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 37352109 - 37352142
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||| ||||||||||||||||||||||||||    
T  37352109 ttcaacctgtgcaaagcacgggtttgtaactagt 37352142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 37357008 - 37357041
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||| ||||||||||||||||||||||||||    
T  37357008 ttcaacctgtgcaaagcacgggtttgtaactagt 37357041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 39404625 - 39404592
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  39404625 ttcaacccgtgcgaagcacgggtttgtaactagt 39404592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 43014624 - 43014591
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  43014624 ttcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 14828833 - 14828801
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||| |||||||||||||||||||||||    
T  14828833 aacccgtgcgaagcacgggtttgtaactagtaa 14828801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 1375990 - 1376023
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  1375990 ttcaacccgtgcaaagcacgggtttgtaactagt 1376023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 19320454 - 19320421
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  19320454 ttcaacccgtgcaaagcacgggtttgtaactagt 19320421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 22194501 - 22194468
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  22194501 ttcaacccgtgcaaagcacgggtttgtaactagt 22194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 24289234 - 24289201
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  24289234 ttcaacccgtgcaaagcacgggtttgtaactagt 24289201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 28573168 - 28573201
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  28573168 ttcaacccgtgcaaagcacgggtttgtaactagt 28573201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 33074265 - 33074232
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  33074265 ttcaacccgtgcaaagcacgggtttgtaactagt 33074232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 12245202 - 12245172
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||||||||||||||||||||||    
T  12245202 aacccgtgcaaagcacgggtttgtaactagt 12245172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 3929781 - 3929748
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  3929781 ttcaacccgtgcgaagcacgggtttgtaactagt 3929748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 4893976 - 4894009
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  4893976 ttcaacccgtgcgaagcacgggtttgtaactagt 4894009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 10763596 - 10763629
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  10763596 ttcaacccgtgcgaagcacgggtttgtaactagt 10763629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 23909749 - 23909716
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  23909749 ttcaacccgtgcgaagcacgggtttgtaactagt 23909716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 28565463 - 28565430
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  28565463 ttcaacccgtgcgaagcacgggtttgtaactagt 28565430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 28631819 - 28631852
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  28631819 ttcaacccgtgcgaagcacgggtttgtaactagt 28631852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 29693396 - 29693429
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  29693396 ttcaacccgtgcgaagcacgggtttgtaactagt 29693429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 29840723 - 29840690
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  29840723 ttcaacccgtgcgaagcacgggtttgtaactagt 29840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 33363580 - 33363617
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaatt 58  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  33363580 ttcaatccgtgcgaagcacgggtttgtaactagtaatt 33363617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 38896823 - 38896856
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  38896823 ttcaacccgtgcgaagcacgggtttgtaactagt 38896856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 42682600 - 42682633
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  42682600 ttcaacccgtgcgaagcacgggtttgtaactagt 42682633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 47137867 - 47137900
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  47137867 ttcaacccgtgcgaagcacgggtttgtaactagt 47137900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 48183209 - 48183176
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  48183209 ttcaacccgtgcgaagcacgggtttgtaactagt 48183176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 52037424 - 52037391
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  52037424 ttcaacccgtgcgaagcacgggtttgtaactagt 52037391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 61721 - 61756
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    |||||||||||| |||||||||||||||||||||||    
T  61721 ttcaacccgtgcgaagcacgggtttgtaactagtaa 61756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 1363231 - 1363269
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaatta 59  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  1363231 ttcaacccgtgcgaagcacgggtttgtaactagttatta 1363269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 4110069 - 4110103
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  4110069 ttcaacccgtgcgaagcacgggtttgtaactagta 4110103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 875539 - 875572
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  875539 ttcaacccgtgcgaagcacgggtttgtaactagt 875572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 1932348 - 1932381
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  1932348 ttcaacccgtgcgaagcacgggtttgtaactagt 1932381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 6966270 - 6966237
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  6966270 ttcaacccgtgcgaagcacgggtttgtaactagt 6966237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 11681703 - 11681670
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  11681703 ttcaacccgtgcgaagcacgggtttgtaactagt 11681670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 18389201 - 18389168
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  18389201 ttcaacccgtgcgaagcacgggtttgtaactagt 18389168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 18985225 - 18985192
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  18985225 ttcaacccgtgcgaagcacgggtttgtaactagt 18985192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 24238119 - 24238152
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaat 57  Q
    |||||||||||||||| |||||||||||||||||    
T  24238119 aacccgtgcaaagcacaggtttgtaactagtaat 24238152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 24447803 - 24447836
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  24447803 ttcaacccgtgcgaagcacgggtttgtaactagt 24447836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 33319057 - 33319090
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  33319057 ttcaacccgtgcgaagcacgggtttgtaactagt 33319090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 22522279 - 22522313
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagta 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  22522279 ttcaacccgtgcgaagcacgggtttgtaactagta 22522313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 52843193 - 52843231
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagtaatta 59  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  52843193 ttcaactcgtgcgaagcacgggtttgtaactagtaatta 52843231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 188744 - 188777
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  188744 ttcaacccgtgcgaagcacgggtttgtaactagt 188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 4137433 - 4137400
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  4137433 ttcaacccgtgcgaagcacgggtttgtaactagt 4137400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5240996 - 5241029
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  5240996 ttcaacccgtgcgaagcacgggtttgtaactagt 5241029  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 8396774 - 8396807
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  8396774 ttcaacccgtgcgaagcacgggtttgtaactagt 8396807  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 18688682 - 18688715
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  18688682 ttcaacccgtgcgaagcacgggtttgtaactagt 18688715  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21165964 - 21165931
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  21165964 ttcaacccgtgcgaagcacgggtttgtaactagt 21165931  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 22477914 - 22477947
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  22477914 ttcaacccgtgcgaagcacgggtttgtaactagt 22477947  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 22759090 - 22759057
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  22759090 ttcaacccgtgcgaagcacgggtttgtaactagt 22759057  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 26100811 - 26100778
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  26100811 ttcaacccgtgcgaagcacgggtttgtaactagt 26100778  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 26776467 - 26776434
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  26776467 ttcaacccgtgcgaagcacgggtttgtaactagt 26776434  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 35861010 - 35861043
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  35861010 ttcaacccgtgcgaagcacgggtttgtaactagt 35861043  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 41053812 - 41053845
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  41053812 ttcaacccgtgcgaagcacgggtttgtaactagt 41053845  T

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Target: scaffold0484 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 8209 - 8176
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  8209 ttcaacccgtgcgaagcacgggtttgtaactagt 8176  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 24952 - 24919
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  24952 ttcaacccgtgcgaagcacgggtttgtaactagt 24919  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 13031 - 13064
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  13031 ttcaacccgtgcgaagcacgggtttgtaactagt 13064  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 52726 - 52693
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  52726 ttcaacccgtgcgaagcacgggtttgtaactagt 52693  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 14656 - 14689
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  14656 ttcaacccgtgcgaagcacgggtttgtaactagt 14689  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 17434 - 17401
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    |||||||||||| |||||||||||||||||||||    
T  17434 ttcaacccgtgcgaagcacgggtttgtaactagt 17401  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 92633 - 92666
Alignment:
Q  21 ttcaacccgtgcaaagcacgggtttgtaactagt 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  92633 ttcaacccgtgcaaagcacgggtttataactagt 92666  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 25644 - 25612
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||| |||||||||||||||||||||||    
T  25644 aacccgtgcgaagcacgggtttgtaactagtaa 25612  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 10876 - 10908
Alignment:
Q  24 aacccgtgcaaagcacgggtttgtaactagtaa 56  Q
    ||||||||| |||||||||||||||||||||||    
T  10876 aacccgtgcgaagcacgggtttgtaactagtaa 10908  T

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