View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10486_low_10 (Length: 308)
Name: NF10486_low_10
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 28884745 - 28884458
Alignment:
| Q |
18 |
acatatgattatagattctccgcagttagaatatttagtagtatgcatgccttctta-------ccaagatatcaagtctcccaaactgtgtcttaaaaa |
110 |
Q |
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| T |
28884745 |
acatatgattatagattctccgcagttagaatatttagtagtatgcatgccttcttagttcttaccaagatatcaagtctcccaaactgtgtcttaaaaa |
28884646 |
T |
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| Q |
111 |
actgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaacataacttggtcagagagaccaaactgtttcaatttctcaatggcttc |
210 |
Q |
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| T |
28884645 |
actgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaacataacttggtcagagagaccaaactgtttcaatttctgaatggcttc |
28884546 |
T |
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| Q |
211 |
atttccttttttctcatctctagctgtgagcatcaccttgacaccatttgaggccaacattttaacagtctcaaatcctatccctttg |
298 |
Q |
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| T |
28884545 |
attcccttttttctcatctctagctgtaagcaccaccttgacaccatttgaggccaacattttaacagtctcaaatcctatccctttg |
28884458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 69 - 297
Target Start/End: Complemental strand, 28879794 - 28879566
Alignment:
| Q |
69 |
ttcttaccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaacataac |
168 |
Q |
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| T |
28879794 |
ttcttaccaagatatcaagtctcccaaactgtgtcttaacaaattctaccagtgaagtaatactagcagggtcagtgacatcaagttggtgaaacataac |
28879695 |
T |
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| Q |
169 |
ttggtcagagagaccaaactgtttcaatttctcaatggcttcatttccttttttctcatctctagctgtgagcatcaccttgacaccatttgaggccaac |
268 |
Q |
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| T |
28879694 |
ttggtcagagagaccaaactgtttcaatttctgaatggcttcattcccctttttctcatctctagctgtgagcatcaccttgacaccatttgaggccaac |
28879595 |
T |
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| Q |
269 |
attttaacagtctcaaatcctatcccttt |
297 |
Q |
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| T |
28879594 |
attttaacagtctcaaatcctatcccttt |
28879566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 11952733 - 11952826
Alignment:
| Q |
69 |
ttcttaccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaa |
162 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| ||||| || | ||||| ||||||| || ||||| ||||||||||| ||||| |
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| T |
11952733 |
ttcttaccaagatatcaagtcttccaaactgagtcttaacaaactcaaccaatgaagcaatactaaaaggatcagtaacatcaagttgatgaaa |
11952826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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