View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_12 (Length: 282)

Name: NF10486_low_12
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_12
NF10486_low_12
[»] chr4 (15 HSPs)
chr4 (5-271)||(3749320-3749586)
chr4 (16-271)||(5858443-5858698)
chr4 (45-269)||(5582905-5583129)
chr4 (75-271)||(5847705-5847901)
chr4 (15-259)||(5570708-5570952)
chr4 (75-271)||(5885920-5886116)
chr4 (44-255)||(5565207-5565418)
chr4 (75-277)||(5894759-5894961)
chr4 (75-255)||(5605556-5605736)
chr4 (44-270)||(5553616-5553842)
chr4 (16-269)||(5852581-5852834)
chr4 (5-271)||(5559377-5559643)
chr4 (74-271)||(5538833-5539030)
chr4 (158-271)||(5613627-5613740)
chr4 (207-271)||(251993-252057)
[»] chr8 (1 HSPs)
chr8 (86-271)||(1485703-1485888)
[»] scaffold0454 (1 HSPs)
scaffold0454 (86-271)||(884-1070)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 3749320 - 3749586
Alignment:
5 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3749320 agtcaatagttgacagtgttccaatctgaaagattgcatgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 3749419  T
105 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3749420 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgat 3749519  T
205 aaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
3749520 aaatcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcattgctcaattcat 3749586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 5858443 - 5858698
Alignment:
16 gacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttt 115  Q
    |||| ||||||||||||||||||     |||||||||||||||  ||| ||||||  |||||||||||||| ||||||||||||||||| ||||||||||    
5858443 gacaatgttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgttt 5858542  T
116 tcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagta 215  Q
      || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | ||||| |    
5858543 caggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttagggaagaatcaaggggacctaatagaccacagga 5858642  T
216 agacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    ||||||||||||||| || | ||  ||||||||||||||||||||| || ||||||    
5858643 agacatgctcaattcttgtaggtttcgcaacggcaacaaagcattgatccattcat 5858698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 269
Target Start/End: Complemental strand, 5583129 - 5582905
Alignment:
45 tggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccca 144  Q
    ||||||| |||| |||||| |||||   ||||||||||||||||| || ||||| ||||||| ||||||||  |||||||| ||||||||||||||||||    
5583129 tggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttccca 5583030  T
145 tcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgca 244  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| | || | || | |||    
5583029 tcaagaataatgactgataggttctttagtcttgttagggaagaatcaaggggacctgatagatcacaataagacatactcaatacttggaggttaggca 5582930  T
245 acggcaacaaagcattgctcaattc 269  Q
      |||||||||||||| ||| ||||    
5582929 ggggcaacaaagcattcctccattc 5582905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 5847901 - 5847705
Alignment:
75 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 174  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| |||||||| |||||| || |||||| |||||| |  ||||||||||||    
5847901 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagt 5847802  T
175 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||||| |  |||| ||||||||| |||||||||||||||||| ||||||    
5847801 cttgttagggaagaatcaaggggtcctgatagatcacaatcagacatgctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcat 5847705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 5570952 - 5570708
Alignment:
15 tgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgtt 114  Q
    ||||| ||||||||| ||||||||     ||||||||||||| |||||| |||||   | ||||||||||||||| |  ||||||||||||| |||||||    
5570952 tgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattggaaaatgtt 5570853  T
115 ttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagt 214  Q
    |  |||||| | ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| |||||| |    
5570852 tctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttgttagggaagaagaaaggggtcctgatagatcacaat 5570753  T
215 aagacatgctcaattcctgcaagtcacgcaacggcaacaaagcat 259  Q
    ||||||| |||||| | || | || ||||| ||| ||||||||||    
5570752 aagacatactcaatacttggaggttacgcagcggaaacaaagcat 5570708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 5886116 - 5885920
Alignment:
75 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 174  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| ||||||||||||||| |  ||||||||||||| |||||||||||||||    
5886116 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagt 5886017  T
175 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
     |||  ||||| ||||||||||||||||||| |  ||||| | |||||||||| || ||||||||||||| ||| ||||||||||| ||| ||||||    
5886016 tttgaaagggaggaatcaaggggtcctgatagactacagttatacatgctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcat 5885920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 5565207 - 5565418
Alignment:
44 gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc 143  Q
    |||||||||||||||||||  |||||    |||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||| ||  |    
5565207 gtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtc 5565306  T
144 atcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgc 243  Q
    | ||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| | | |||||   |||||||  ||||| || | ||||||     
5565307 accaagaataatgactgataggttctctagttttgaaagggaagaatcaaggggtcctgaaagaccacagcttgacatgcctaattcttgtaggtcacgg 5565406  T
244 aacggcaacaaa 255  Q
    ||||||||||||    
5565407 aacggcaacaaa 5565418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 277
Target Start/End: Complemental strand, 5894961 - 5894759
Alignment:
75 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 174  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||| ||  |||||||||||||| | || ||||||||||||||| ||||||| ||||    
5894961 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagt 5894862  T
175 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcatctc 274  Q
    |||| ||||||||||||||||| |||||| |||||||| | ||||||||||||||| || | ||||||||| || | ||||||||||||| ||| || ||    
5894861 cttgatagggaagaatcaagggatcctgacaaatcacaattagacatgctcaattcttgtaggtcacgcaaaggtatcaaagcattgctccatttatgtc 5894762  T
275 tct 277  Q
    |||    
5894761 tct 5894759  T

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Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 5605556 - 5605736
Alignment:
75 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 174  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||      
5605556 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaac 5605655  T
175 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaa 255  Q
    |||| |||||||||||||||||||||||| ||| ||||||  ||||| |  ||||| || | |||||| | ||||||||||    
5605656 cttgctagggaagaatcaaggggtcctgaaaaaccacagtctgacatacctaattcttgtaggtcacggagcggcaacaaa 5605736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 5553616 - 5553842
Alignment:
44 gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc 143  Q
    ||||||||||||| || ||| |||||   | |||||| |||||||||| ||||| |||||||||||||||||  || || || || |||||||||||||     
5553616 gtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcct 5553715  T
144 atcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgc 243  Q
    ||||||||||||||| |||||||| | |||| ||| |||||||||||| || || |||| || |||||||| | |||||||||| || || |  |||| |    
5553716 atcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcacagttatacatgctcaactcttgtagttcacac 5553815  T
244 aacggcaacaaagcattgctcaattca 270  Q
    | ||||||||||||||||||| |||||    
5553816 agcggcaacaaagcattgctccattca 5553842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 5852834 - 5852581
Alignment:
16 gacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttt 115  Q
    |||||||||||||||||||||||     ||||||||||||| |||||| |||||   | |||||| |||||||||| ||||| |||||| ||||||||||    
5852834 gacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaattagcaaatgttt 5852735  T
116 tcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagta 215  Q
      || || || || ||||||||||||| |||||||||||||||||||||||||  |||| ||| ||||||||||||||| || |||| || |||||| |     
5852734 ctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagttttgatagggaagaatcaagtggccctgctagatcacattt 5852635  T
216 agacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattc 269  Q
    | ||| ||||||    || |  |||||||  |||||||||||||||||| ||||    
5852634 atacaagctcaacatttgtagttcacgcagtggcaacaaagcattgctccattc 5852581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 5559377 - 5559643
Alignment:
5 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 104  Q
    ||||||||  ||||| ||||||||| || |||||   | ||||||||||| | ||||||  ||||   |||||||| ||||| ||||| ||| | |||||    
5559377 agtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagggttgtcaaatttctgaaatt 5559476  T
105 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgat 204  Q
    || ||||||||  ||||| || || ||||||||||| ||||||||||||||||  ||||  |||| ||||||||  || || |||||||||||||||| |    
5559477 ggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacagagatgaatcaaggggtcctgtt 5559576  T
205 aaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    ||||  |||| ||||||| ||| ||| |  |   |||||||||||||||||||||||||| ||||||    
5559577 aaattgcagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcat 5559643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 5539030 - 5538833
Alignment:
74 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag 173  Q
    ||||||| ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||  ||||| ||||||||    
5539030 caagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctag 5538931  T
174 tcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    |||||  || || || ||||| ||||||| ||||| ||||| ||||||| ||| ||| |  |   || | ||||||||||||||||||||| ||||||    
5538930 tcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcat 5538833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 5613627 - 5613740
Alignment:
158 ctgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagc 257  Q
    ||||||||||||||||| |||  |||||||||||||| |||||||||| || ||||| ||||||||||| ||| || | ||| | ||| |||||||||||    
5613627 ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagc 5613726  T
258 attgctcaattcat 271  Q
    |||| || ||||||    
5613727 attgatccattcat 5613740  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 252057 - 251993
Alignment:
207 atcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    |||||||| |||||||||||| || ||||  |||| || ||||||||||||||||| | ||||||    
252057 atcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcat 251993  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 1485703 - 1485888
Alignment:
86 tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggga 185  Q
    |||||| |||||||||||||| ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  |||||    
1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga 1485802  T
186 agaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
     ||||||| ||||||||||| |  ||| |    |||||||||  | ||||  ||||||| ||||||||| ||||||||| ||||||    
1485803 ggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat 1485888  T

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Target: scaffold0454 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 884 - 1070
Alignment:
86 tggtcaagtttttaaaatt-ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg 184  Q
    |||||| |||||||||||| || ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  ||||    
884 tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg 983  T
185 aagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 271  Q
    | ||||||| ||||||||||| |  ||| |    |||||||||  | ||||  ||||||| ||||||||| ||||||||| ||||||    
984 aggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat 1070  T

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