View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10486_low_13 (Length: 256)
Name: NF10486_low_13
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 44316247 - 44316068
Alignment:
| Q |
8 |
ggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatgtggaaggtatgtgctgcaaattatgaagttgttgtttaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44316247 |
ggacatcaacatagactaaattgacgcaattgcattgtacaaggacagtcactcagcatgtggaaggtatgtgatgcaaattatgaagttgttgtttaaa |
44316148 |
T |
|
| Q |
108 |
tgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaattcctgatttcagaggaattaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44316147 |
tgtcaaacaccaattttcaaattagtgactatgatttgttactcttttctcttgtgaattcctgatttcagaggaattaa |
44316068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 44316018 - 44315966
Alignment:
| Q |
190 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattaga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44316018 |
aaagaagtaatgtgggtatttcgagtcttgctttgagaggacaatgaattaga |
44315966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University