View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_14 (Length: 255)

Name: NF10486_low_14
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_14
NF10486_low_14
[»] chr1 (3 HSPs)
chr1 (104-238)||(44128216-44128350)
chr1 (104-238)||(44132421-44132555)
chr1 (104-238)||(44140843-44140977)
[»] chr5 (6 HSPs)
chr5 (106-238)||(1504402-1504534)
chr5 (104-238)||(1491638-1491772)
chr5 (105-238)||(1481748-1481881)
chr5 (104-231)||(1477644-1477771)
chr5 (104-232)||(1485490-1485620)
chr5 (99-226)||(1496860-1496987)
[»] chr7 (5 HSPs)
chr7 (104-235)||(5309739-5309870)
chr7 (104-238)||(5314553-5314687)
chr7 (104-229)||(5290082-5290207)
chr7 (104-229)||(5302108-5302233)
chr7 (104-238)||(5283911-5284045)
[»] chr2 (1 HSPs)
chr2 (104-232)||(24165437-24165565)
[»] chr3 (2 HSPs)
chr3 (107-223)||(37863716-37863832)
chr3 (107-190)||(39029608-39029691)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 44128350 - 44128216
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||    
T  44128350 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaa 44128251  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    || ||||| ||||||||||||||||| ||||||||    
T  44128250 ttggctgggtttgcagtgccaatggctaaaatggt 44128216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 44132555 - 44132421
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||    
T  44132555 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaa 44132456  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    || ||||| ||||||||||||||||| ||||||||    
T  44132455 ttggctgggtttgcagtgccaatggctaaaatggt 44132421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 44140977 - 44140843
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||    
T  44140977 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaa 44140878  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    || ||||| ||||||||||||||||| ||||||||    
T  44140877 ttggctgggtttgcagtgccaatggctaaaatggt 44140843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 1504534 - 1504402
Alignment:
Q  106 acttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaatt 205  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||| |||| |||||||||||||||||||||| ||||||| |||||||||    
T  1504534 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 1504435  T
Q  206 tgctggatttgcagtgccaatggccaaaatggt 238  Q
    || ||||||||||||||||||||||||||||||    
T  1504434 tggtggatttgcagtgccaatggccaaaatggt 1504402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 1491772 - 1491638
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    |||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| |||||||||||| |||||||||||||| ||||||| ||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    ||||||||||||||||||||||||||||| |||||    
T  1491672 tttgctggatttgcagtgccaatggccaatatggt 1491638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 1481881 - 1481748
Alignment:
Q  105 tacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaat 204  Q
    ||||||||||||||||| ||||| |||||||||||    || |||||||| |||| |||||||||||| |||||||||||||| ||||||| |||||| |    
T  1481881 tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagt 1481782  T
Q  205 ttgctggatttgcagtgccaatggccaaaatggt 238  Q
    |||||||||||||||||||||||||||| |||||    
T  1481781 ttgctggatttgcagtgccaatggccaatatggt 1481748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 1477771 - 1477644
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    |||||||||||||||||| ||||| ||||| ||||||   ||||||||||| |||| |||||| ||||| |||||||||||||| ||||||| ||||||     
T  1477771 atacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacacag 1477672  T
Q  204 tttgctggatttgcagtgccaatggcca 231  Q
    || |||||||||||||||||||||||||    
T  1477671 ttggctggatttgcagtgccaatggcca 1477644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 1485620 - 1485490
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagta--gaaatcaggatatgtactttgttgaacac 201  Q
    ||||||||| ||||| || ||||||||| ||||||  ||||||||||| |||||||||||| | |||||  ||||||||||||||| ||||||| |||||    
T  1485620 atacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaacac 1485521  T
Q  202 aatttgctggatttgcagtgccaatggccaa 232  Q
    |||||| |||||||||||| || ||||||||    
T  1485520 aatttggtggatttgcagttcctatggccaa 1485490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 1496987 - 1496860
Alignment:
Q  99 aatttatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaa 198  Q
    ||||| |||| ||| ||||| |||||||||| ||| | |||||||||||||||| | |||| || | | || |||| |||||||||||| ||||||| ||    
T  1496987 aatttttactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaa 1496888  T
Q  199 cacaatttgctggatttgcagtgccaat 226  Q
     |||||||| ||||||||||||||||||    
T  1496887 tacaatttgttggatttgcagtgccaat 1496860  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 5309870 - 5309739
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||| || |||||||| || |||||||| ||||| |||||||||| |||||||||||| |||||||||||||| ||||||| |||||||    
T  5309870 atacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacaa 5309771  T
Q  204 tttgctggatttgcagtgccaatggccaaaat 235  Q
    ||||||||||||||||| ||||||||||||||    
T  5309770 tttgctggatttgcagtaccaatggccaaaat 5309739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 5314687 - 5314553
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||| || ||||||||||||||||||   ||||| ||||||||||  ||||||||||| |||||||||||||| ||||||| |||||||    
T  5314687 atacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacacaa 5314588  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    ||||||||||||||||| |||||||||||||||||    
T  5314587 tttgctggatttgcagtaccaatggccaaaatggt 5314553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 5290082 - 5290207
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||| || ||||||| |||||||    
T  5290082 atacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaa 5290181  T
Q  204 tttgctggatttgcagtgccaatggc 229  Q
    ||||||||||||||||||||||||||    
T  5290182 tttgctggatttgcagtgccaatggc 5290207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 5302233 - 5302108
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||| || ||||||| |||||||    
T  5302233 atacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaa 5302134  T
Q  204 tttgctggatttgcagtgccaatggc 229  Q
    ||||||||||||||||||||||||||    
T  5302133 tttgctggatttgcagtgccaatggc 5302108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 5284045 - 5283911
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||| |||||||||||| ||||||||||| || ||||||| |||||||    
T  5284045 atacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacacaa 5283946  T
Q  204 tttgctggatttgcagtgccaatggccaaaatggt 238  Q
    ||||||||||||||||| ||||||||||| |||||    
T  5283945 tttgctggatttgcagtcccaatggccaagatggt 5283911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 24165437 - 24165565
Alignment:
Q  104 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaa 203  Q
    ||||||||| |||||||| ||||| ||||||||||   |||||||||| || |||| || | |||||||||||||||||||||| ||||||| ||||||     
T  24165437 atacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacacag 24165536  T
Q  204 tttgctggatttgcagtgccaatggccaa 232  Q
    |||| ||||||||||||||||||||||||    
T  24165537 tttggtggatttgcagtgccaatggccaa 24165565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 37863716 - 37863832
Alignment:
Q  107 cttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtactttgttgaacacaattt 206  Q
    |||||||||||| |||||||| ||| |||||||||| ||||| ||||| |||| |||    ||||| || |||||||||||||| || | |||||| |||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt 37863815  T
Q  207 gctggatttgcagtgcc 223  Q
       ||||||||||||||    
T  37863816 tgaggatttgcagtgcc 37863832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 39029691 - 39029608
Alignment:
Q  107 cttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgcgattttaaagtagaaatcaggatatgtact 190  Q
    |||||||||||| || ||||| ||||| || || ||||||||||||||||||| |||    |||||||| || |||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgcggaagtagaagtctggatatgtact 39029608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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