View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10486_low_16 (Length: 254)
Name: NF10486_low_16
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 43474251 - 43474409
Alignment:
| Q |
1 |
ctcacaattcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactgtctcacgactagagtttaaagagaaatatttgattgattggtac |
100 |
Q |
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| T |
43474251 |
ctcacaattcttgcatgagcacgacaatgataagtatcgtggtgccaaaggaactgtctcgcgactagagtttaaagagaaatacttgattgattggtac |
43474350 |
T |
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| Q |
101 |
atgactgtcttggagctccaggaccaaccgaatttttctgatgagatatttgaggagga |
159 |
Q |
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| T |
43474351 |
atgactgtcttggagctccaggaccaaccggatttttctgatgagatatttgaggagga |
43474409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 43572832 - 43572680
Alignment:
| Q |
7 |
attcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactgtctcacgactagagtttaaagagaaatatttgattgattggtacatgact |
106 |
Q |
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| T |
43572832 |
attcttgcatgagcacaacaatgataagtattgcggcaacaaaggaactgtctctcgactagagtttaaacagaaatatttgattgattggtacatcact |
43572733 |
T |
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| Q |
107 |
gtcttggagctccaggaccaaccgaatttttctgatgagatatttgaggagga |
159 |
Q |
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| T |
43572732 |
gtcttggagctccaggatcgaccgaatttttctgatgagatatttgaggagga |
43572680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 43565996 - 43565838
Alignment:
| Q |
1 |
ctcacaattcttgcatgagcacgacaatgataagtattgtggtgccaaaggaactgtctcacgactagagtttaaagagaaatatttgattgattggtac |
100 |
Q |
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| T |
43565996 |
ctcacaattcctgcatcagcacgacaatgacaagtatcgcggcaacaaaggaactgtctcgcgactagagtttaaattgaaatatttgatggattggtac |
43565897 |
T |
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| Q |
101 |
atgactgtcttggagctccaggaccaaccgaatttttctgatgagatatttgaggagga |
159 |
Q |
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| T |
43565896 |
aacagtgtcttggagcttcaggaccaaccaaatttctctgatgagatatttgaggagga |
43565838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 43474451 - 43474537
Alignment:
| Q |
156 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttctc |
242 |
Q |
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| T |
43474451 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactaacttcttttgagttcgacatttcttctc |
43474537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 43565796 - 43565710
Alignment:
| Q |
156 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttctc |
242 |
Q |
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| T |
43565796 |
aggatattaaggctcagattatggaggttaacaatgctttaaagctcagaaccgaactagcttcgtttgagttcgacatttcttctc |
43565710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 43572638 - 43572553
Alignment:
| Q |
156 |
aggatattgaggctcagattatggaggttaaaaatgctttaaagctcagagccgaactagcttcttttgagttcgtcatttcttct |
241 |
Q |
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| T |
43572638 |
aggatattcaggctcagattatggaggttaaaactgctttaaagctcagagccgaactaacttctcttgagttcgacatttcttct |
43572553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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