View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10486_low_19 (Length: 242)
Name: NF10486_low_19
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_19 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 43473952 - 43474174
Alignment:
| Q |
20 |
gaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtattcgga |
119 |
Q |
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| T |
43473952 |
gaatatagaatgaagttacatgatttctctcttgaagaagaagagaaacaaaccgttttcaacttcatcgccttagactacaaaaataggcgtattcgga |
43474051 |
T |
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| Q |
120 |
gtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgctcgaccttttacgtctacagaatcc |
219 |
Q |
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| T |
43474052 |
gtcatggatttgcatggaattctagtcaaaagcgtctgcgccgttccatagcatacttgtctctttactctttgctcgaccttttacgtcgacagaatcc |
43474151 |
T |
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| Q |
220 |
cgtctctattcacaatgattgtc |
242 |
Q |
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| T |
43474152 |
cgtctctattcacaatgattgtc |
43474174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 43566295 - 43566073
Alignment:
| Q |
20 |
gaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtattcgga |
119 |
Q |
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|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||| |
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| T |
43566295 |
gaatacagaatgaagttaaatgatttctcccttgaagaacaagagaaacaaaccgtttccaaattcatcgccttagactacaaaaataggcgtatttgga |
43566196 |
T |
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| Q |
120 |
gtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgctcgaccttttacgtctacagaatcc |
219 |
Q |
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| T |
43566195 |
atagtggatttgcatggaattctggtcgaaagcatcggcgccgttccatagcatacttgtctctttactctttgcttgaccttttacgtcaagagaatcc |
43566096 |
T |
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| Q |
220 |
cgtctctattcacaatgattgtc |
242 |
Q |
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| T |
43566095 |
cgtctctatccacaatgaatgtc |
43566073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 43573129 - 43572915
Alignment:
| Q |
34 |
gttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtattcg---gagtcatgga--- |
127 |
Q |
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| T |
43573129 |
gttacatgatttatcacttgaagaagaagtgaaaaagactgtttccaacttcatctctatcgactataaaaatagacgtattcgcaagagtaatggaata |
43573030 |
T |
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| Q |
128 |
tttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgctcgaccttttacgtctacagaatcccgtctcta |
227 |
Q |
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| T |
43573029 |
tttgcattcaatattagtcgaaaccgtcagcgtcgttccatggcatactcgtctctttactctttgctcagccttttacgtcgacagaatcccgtctcta |
43572930 |
T |
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| Q |
228 |
ttcacaatgattgtc |
242 |
Q |
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| T |
43572929 |
tccccaatgaatgtc |
43572915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 43562311 - 43562258
Alignment:
| Q |
141 |
ctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgc |
194 |
Q |
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| T |
43562311 |
ctagtcaaaagcatcgacgccattccatagcatacttgtctctttactctttgc |
43562258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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